Agyeman AA, Bergen PJ, Rao GG, Nation RL, Landersdorfer CB (2020) A systematic review and meta-analysis of treatment outcomes following antibiotic therapy among patients with carbapenem-resistant Klebsiella pneumoniae infections. Int J Antimicrob Agents 55 (1):105833. https://doi.org/10.1016/j.ijantimicag.2019.10.014
Article CAS PubMed Google Scholar
Baltekin Ö, Boucharin A, Tano E, Andersson DI, Elf J (2017) Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging. Proc Natl Acad Sci U S A 114 (34):9170–9175. https://doi.org/10.1073/pnas.1708558114
Article CAS PubMed PubMed Central Google Scholar
Berry D, Mader E, Lee TK, Woebken D, Wang Y, Zhu D, Palatinszky M, Schintlmeister A, Schmid MC, Hanson BT, Shterzer N, Mizrahi I, Rauch I, Decker T, Bocklitz T, Popp J, Gibson CM, Fowler PW, Huang WE, Wagner M (2015) Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells. Proc Natl Acad Sci U S A 112 (2):E194–203. https://doi.org/10.1073/pnas.1420406112
Article CAS PubMed Google Scholar
Bush K, Bradford PA (2019) Interplay between β-lactamases and new β-lactamase inhibitors. Nat Rev Microbiol 17 (5):295–306. https://doi.org/10.1038/s41579-019-0159-8
Article CAS PubMed Google Scholar
Cerqueira GC, Earl AM, Ernst CM, Grad YH, Dekker JP, Feldgarden M, Chapman SB, Reis-Cunha JL, Shea TP, Young S, Zeng Q, Delaney ML, Kim D, Peterson EM, O’Brien TF, Ferraro MJ, Hooper DC, Huang SS, Kirby JE, Onderdonk AB, Birren BW, Hung DT, Cosimi LA, Wortman JR, Murphy CI, Hanage WP (2017) Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks. Proc Natl Acad Sci U S A 114 (5):1135–1140. https://doi.org/10.1073/pnas.1616248114
Article CAS PubMed PubMed Central Google Scholar
Chen C, Shi Q, Hu X, Liu X, Liu Y, Liu R (2022) Co-Existence of KPC-2, LAP-2, and CTX-M-65 in an ST1469 Multidrug-Resistant Klebsiella pneumoniae strain in China. Infect Drug Resist 15:6731–6737. https://doi.org/10.2147/idr.S392063
Article CAS PubMed PubMed Central Google Scholar
Ferri M, Ranucci E, Romagnoli P, Giaccone V (2017) Antimicrobial resistance: A global emerging threat to public health systems. Crit Rev Food Sci Nutr 57 (13):2857–2876. https://doi.org/10.1080/10408398.2015.1077192
Article CAS PubMed Google Scholar
Global burden of bacterial antimicrobial (2024) Resistance 1990–2021: a systematic analysis with forecasts to 2050. Lancet 404 (10459):1199–1226. https://doi.org/10.1016/s0140-6736(24)01867-1
Guo G, Guo C, Qie X, He D, Meng S, Su L, Liang S, Yin S, Yu G, Zhang Z, Hua X, Song Y (2024) Correlation analysis between Raman spectral signature and transcriptomic features of carbapenem-resistant Klebsiella pneumoniae. Spectrochim Acta Mol Biomol Spectrosc 308:123699. https://doi.org/10.1016/j.saa.2023.123699
Hekmatara M, Heidari Baladehi M, Ji Y, Xu J (2021) D (2)O-Probed Raman microspectroscopy distinguishes the metabolic dynamics of macromolecules in organellar anticancer drug response. Anal Chem 93 (4):2125–2134. https://doi.org/10.1021/acs.analchem.0c03925
Article CAS PubMed Google Scholar
Jesudason T (2024) WHO publishes updated list of bacterial priority pathogens. Lancet Microbe 5 (9):100940. https://doi.org/10.1016/j.lanmic.2024.07.003
Kerremans JJ, Verboom P, Stijnen T, Hakkaart-van Roijen L, Goessens W, Verbrugh HA, Vos MC (2008) Rapid identification and antimicrobial susceptibility testing reduce antibiotic use and accelerate pathogen-directed antibiotic use. J Antimicrob Chemother 61 (2):428–435. https://doi.org/10.1093/jac/dkm497
Article CAS PubMed Google Scholar
Li M, Xu J, Romero-Gonzalez M, Banwart SA, Huang WE (2012) Single cell Raman spectroscopy for cell sorting and imaging. Curr Opin Biotechnol 23 (1):56–63. https://doi.org/10.1016/j.copbio.2011.11.019
Article CAS PubMed Google Scholar
Li F, Ren L, Chen R, Sun X, Xu J, Zhu P, Yang F (2022a) Assessing efficacy of clinical disinfectants for pathogenic Fungi by Single-Cell Raman microspectroscopy. Front Cell Infect Microbiol 12:772378. https://doi.org/10.3389/fcimb.2022.772378
Article CAS PubMed PubMed Central Google Scholar
Li J, Miao B, Wang S, Dong W, Xu H, Si C, Wang W, Duan S, Lou J, Bao Z, Zeng H, Yang Z, Cheng W, Zhao F, Zeng J, Liu XS, Wu R, Shen Y, Chen Z, Chen S, Wang M (2022b) Hiplot: a comprehensive and easy-to-use web service for boosting publication-ready biomedical data visualization. Brief Bioinform 23 (4). https://doi.org/10.1093/bib/bbac261
Liu Y, Ma Y, Zhang L, Sun X, Yang J, Li X, Li F, Chen R, Zhu P, Xu J, Yang F (2022) Single-cell Raman microspectroscopy-based assessment of three intracanal disinfectants’ effect on. 53 (5):902–910. https://doi.org/10.1002/jrs.6311
Lopatkin AJ, Stokes JM, Zheng EJ, Yang JH, Takahashi MK, You L, Collins JJ (2019) Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate. Nat Microbiol 4 (12):2109–2117. https://doi.org/10.1038/s41564-019-0536-0
Article CAS PubMed PubMed Central Google Scholar
Lu J, Chen J, Liu C, Zeng Y, Sun Q, Li J, Shen Z, Chen S, Zhang R (2022) Identification of antibiotic resistance and virulence-encoding factors in Klebsiella pneumoniae by Raman spectroscopy and deep learning. Microb Biotechnol 15 (4):1270–1280. https://doi.org/10.1111/1751-7915.13960
Article CAS PubMed Google Scholar
Manina G, Dhar N, McKinney JD (2015) Stress and host immunity amplify Mycobacterium tuberculosis phenotypic heterogeneity and induce nongrowing metabolically active forms. Cell Host Microbe 17 (1):32–46. https://doi.org/10.1016/j.chom.2014.11.016
Article CAS PubMed Google Scholar
Mirande C, Canard I, Buffet Croix Blanche S, Charrier JP, van Belkum A, Welker M, Chatellier S (2015) Rapid detection of carbapenemase activity: benefits and weaknesses of MALDI-TOF MS. Eur J Clin Microbiol Infect Dis 34 (11):2225–2234. https://doi.org/10.1007/s10096-015-2473-z
Article CAS PubMed Google Scholar
Muresu N, Del Rio A, Fox V, Scutari R, Alteri C, Are BM, Terragni P, Sechi I, Sotgiu G, Piana A (2022) Genomic characterization of KPC-31 and OXA-181 Klebsiella pneumoniae resistant to new generation of β-Lactam/β-Lactamase inhibitor combinations. Antibiot (Basel) 12 (1). https://doi.org/10.3390/antibiotics12010010
Noguchi T, Matsumura Y, Kanahashi T, Tanaka M, Tsuchido Y, Matsumura T, Nakano S, Yamamoto M, Nagao M, Ichiyama S (2019) Role of TEM-1 β-Lactamase in the predominance of Ampicillin-Sulbactam-Nonsusceptible Escherichia coli in Japan. Antimicrob Agents Chemother 63 (2). https://doi.org/10.1128/aac.02366-18
Postek W, Pacocha N, Garstecki P (2022) Microfluidics for antibiotic susceptibility testing. Lab Chip 22 (19):3637–3662. https://doi.org/10.1039/d2lc00394e
Article CAS PubMed Google Scholar
Shah PM (2008) Parenteral carbapenems, clin microbiol infect 14 suppl 1. 175– 80 https://doi.org/10.1111/j.1469-0691.2007.01868.x
Sun B, Kang X, Yue S, Lan L, Li R, Chen C, Zhang W, He S, Zhang C, Fan Y, Wang P, Zheng G, Hong W (2021) A rapid procedure for bacterial identification and antimicrobial susceptibility testing directly from positive blood cultures. Analyst 147 (1):147–154. https://doi.org/10.1039/d1an01210j
Article CAS PubMed Google Scholar
Tacconelli E, Carrara E, Savoldi A, Harbarth S, Mendelson M, Monnet DL, Pulcini C, Kahlmeter G, Kluytmans J, Carmeli Y, Ouellette M, Outterson K, Patel J, Cavaleri M, Cox EM, Houchens CR, Grayson ML, Hansen P, Singh N, Theuretzbacher U, Magrini N (2018) Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis. Lancet Infect Dis 18 (3):318–327. https://doi.org/10.1016/s1473-3099(17)30753-3
Tao Y, Wang Y, Huang S, Zhu P, Huang WE, Ling J, Xu J (2017) Metabolic-Activity-Based assessment of antimicrobial effects by D (2)O-Labeled Single-Cell Raman microspectroscopy. Anal Chem 89 (7):4108–4115. https://doi.org/10.1021/acs.analchem.6b05051
Article CAS PubMed Google Scholar
Wang Q, Wang X, Wang J, Ouyang P, Jin C, Wang R, Zhang Y, Jin L, Chen H, Wang Z, Zhang F, Cao B, Xie L, Liao K, Gu B, Yang C, Liu Z, Ma X, Jin L, Zhang X, Man S, Li W, Pei F, Xu X, Jin Y, Ji P, Wang H (2018) Phenotypic and genotypic characterization of Carbapenem-resistant enterobacteriaceae: data from a longitudinal Large-scale CRE study in China (2012–2016), clin infect dis 67 (suppl_2). S196–s205. https://doi.org/10.1093/cid/ciy660
Wang Y, He J, Sun L, Jiang Y, Hu L, Leptihn S, Zhu P, Fu X, Yu Y, Hua X (2023) IS26 mediated bla (CTX-M-65) amplification in Escherichia coli increase the antibiotic resistance to cephalosporin in vivo. J Glob Antimicrob Resist 35:202–209. https://doi.org/10.1016/j.jgar.2023.09.018
Article CAS PubMed Google Scholar
Willemse-Erix DF, Scholtes-Timmerman MJ, Jachtenberg JW, van Leeuwen WB, Horst-Kreft D, Bakker Schut TC, Deurenberg RH, Puppels GJ, van Belkum A, Vos MC, Maquelin K (2009) Optical fingerprinting in bacterial epidemiology: Raman spectroscopy as a real-time typing method. J Clin Microbiol 47 (3):652–659. https://doi.org/10.1128/jcm.01900-08
Xiao Z, Qu L, Chen H, Liu W, Zhan Y, Ling J, Shen H, Yang L, Chen D (2023) Raman-Based antimicrobial susceptibility testing on antibiotics of last resort. Infect Drug Resist 16:5485–5500. https://doi.org/10.2147/idr.S404732
Article CAS PubMed PubMed Central Google Scholar
Xu T, Gong Y, Su X, Zhu P, Dai J, Xu J, Ma B (2020) Phenome-Genome profiling of single bacterial cell by Raman-Activated Gravity-Driven encapsulation and sequencing. Small 16 (30):e2001172. https://doi.org/10.1002/smll.202001172
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