Banks M, Johnson R, Giver L, Bryant G, Guo M (2022) Industrial production of microbial protein products. Curr Opin Biotechnol 75:102707

Article  PubMed  Google Scholar 

Bäumler M, Schneider M, Ehrenreich A, Liebl W, Weuster-Botz D (2022) Synthetic co‐culture of autotrophic Clostridium carboxidivorans and chain elongating Clostridium kluyveri monitored by flow cytometry. Microb Biotechnol 15(5):1471–1485

Article  PubMed  Google Scholar 

Belini VL, Caurin GAP, Wiedemann P, Suhr H (2017) Yeast fermentation of sugarcane for ethanol production: can it be monitored by using in situ microscopy? Braz J Chem Eng 34:949–959

Article  Google Scholar 

Bertsch A, Roy D, LaPointe G (2019) Enhanced exopolysaccharide production by Lactobacillus rhamnosus in co-culture with Saccharomyces cerevisiae. Appl Sci 9(19):4026

Article  Google Scholar 

Brou P, Taillandier P, Beaufort S, Brandam C (2018) Mixed culture fermentation using Torulaspora delbrueckii and Saccharomyces cerevisiae with direct and indirect contact: impact of anaerobic growth factors. Eur Food Res Technol 244:1699–1710

Article  Google Scholar 

Burmeister A, Grünberger A (2020) Microfluidic cultivation and analysis tools for interaction studies of microbial co-cultures. Curr Opin Biotechnol 62:106–115

Article  PubMed  Google Scholar 

Capitain CC, Nejati F, Zischka M, Berzak M, Junne S, Neubauer P et al (2022) Volatilomics-Based Microbiome evaluation of fermented dairy by prototypic Headspace-Gas Chromatography–High-Temperature ion mobility spectrometry (HS-GC-HTIMS) and Non-Negative matrix factorization (NNMF). Metabolites 12(4):299

Article  PubMed  PubMed Central  Google Scholar 

Castro CC, Nobre C, De Weireld G, Hantson A (2019) Microbial co-culturing strategies for fructo-oligosaccharide production. N Biotechnol 51:1–7

Article  PubMed  Google Scholar 

Chan MZA, Chua JY, Toh M, Liu S (2019) Survival of probiotic strain Lactobacillus paracasei L26 during co-fermentation with S. cerevisiae for the development of a novel beer beverage. Food Microbiol 82:541–550

Article  Google Scholar 

Colon-Ascanio M, Ou J, Ly K, Hu P, Choy JS, Luo X (2022) Probing mutual interactions between Pseudomonas aeruginosa and Candida albicans in a biofabricated membrane-based microfluidic platform. Lab Chip 22(22):4349–4358

Article  PubMed  PubMed Central  Google Scholar 

Dargan S, Kumar M, Ayyagari MR, Kumar G (2020) A survey of deep learning and its applications: a new paradigm to machine learning. Arch Comput Methods Eng 27:1071–1092

Article  Google Scholar 

Diender M, Stams AJ, Sousa DZ (2016) Production of medium-chain fatty acids and higher alcohols by a synthetic co-culture grown on carbon monoxide or Syngas. Biotechnol Biofuels 9:1–11

Article  Google Scholar 

Diender M, Olm IP, Sousa DZ (2021) Synthetic co-cultures: novel avenues for bio-based processes. Curr Opin Biotechnol 67:72–79

Article  PubMed  Google Scholar 

do Amaral Santos CCA, da Silva Libeck B, Schwan RF (2014) Co-culture fermentation of peanut-soy milk for the development of a novel functional beverage. Int J Food Microbiol 186:32–41

Article  Google Scholar 

Egan M, O’Connell Motherway M, Kilcoyne M, Kane M, Joshi L, Ventura M et al (2014) Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium. BMC Microbiol 14:1–14

Article  Google Scholar 

Emmerich J, Tang Q, Wang Y, Neubauer P, Junne S, Maaß S (2019) Optical inline analysis and monitoring of particle size and shape distributions for multiple applications: scientific and industrial relevance. Chin J Chem Eng 27(2):257–277

Article  Google Scholar 

Engel C, Schattenberg F, Dohnt K, Schröder U, Müller S, Krull R (2019) Long-term behavior of defined mixed cultures of Geobacter sulfurreducens and Shewanella oneidensis in bioelectrochemical systems. Front Bioeng Biotechnol 7:60

Article  PubMed  PubMed Central  Google Scholar 

Fan G, Teng C, Xu D, Fu Z, Minhazul KA, Wu Q et al (2019) Enhanced production of Ethyl acetate using co-culture of Wickerhamomyces anomalus and Saccharomyces cerevisiae. J Biosci Bioeng 128(5):564–570

Article  PubMed  Google Scholar 

Ganatsios V, Nigam P, Plessas S, Terpou A (2021) Kefir as a functional beverage gaining momentum towards its health promoting attributes. Beverages 7(3):48

Article  Google Scholar 

Geinitz B, Rehmann L, Büchs J, Regestein L (2020) Noninvasive tool for optical online monitoring of individual biomass concentrations in a defined coculture. Biotechnol Bioeng 117(4):999–1011

Article  PubMed  Google Scholar 

Guadalupe-Daqui M, Chen M, Thompson-Witrick KA, MacIntosh AJ (2021) Yeast morphology assessment through automated image analysis during fermentation. Fermentation 7(2):44

Article  Google Scholar 

Guo L, Xi B, Lu L (2024) Strategies to enhance production of metabolites in microbial co-culture systems. Bioresour Technol: 131049

Guzel-Seydim ZB, Gökırmaklı Ç, Greene AK (2021) A comparison of milk Kefir and water Kefir: physical, chemical, Microbiological and functional properties. Trends Food SciTechnol 113:42–53

Article  Google Scholar 

Haghofer A, Dorl S, Oszwald A, Breuss J, Jacak J, Winkler SM (2020) Evolutionary optimization of image processing for cell detection in microscopy images. Soft Comput 24:17847–17862

Article  Google Scholar 

Hahne J, Lipski A (2021) Growth interferences between bacterial strains from Raw cow’s milk and their impact on growth of Listeria monocytogenes and Staphylococcus aureus. J Appl Microbiol 131(4):2019–2032

Article  PubMed  Google Scholar 

Heins A, Hoang MD, Weuster-Botz D (2022) Advances in automated real‐time flow cytometry for monitoring of bioreactor processes. Eng Life Sci 22(3–4):260–278

Article  PubMed  Google Scholar 

Hodgkin M, Purseglove SM, Chan LL, Perry J, Bolton J (2020) A novel image cytometry-based Lactobacillus bacterial enumeration method for the production of kettle sour beer. J Microbiol Methods 177:106031

Article  PubMed  Google Scholar 

Hsu T, Chen C, Lai Y, Hsieh C, Hsieh C, Cheng K (2025) Influence of sequential inoculation on physicochemical properties, microbial community, and flavor metabolites of pineapple wine by non-Saccharomyces yeast and lactic acid bacteria. J Sci Food Agric

Huang Y, Khumsupan D, Lin S, Santoso SP, Hsu H, Cheng K (2024) Production of bacterial cellulose (BC)/nisin composite with enhanced antibacterial and mechanical properties through co-cultivation of Komagataeibacter Xylinum and Lactococcus lactis subsp. lactis. Int J Biol Macromol 258:128977

Article  PubMed  Google Scholar 

Huber D, Von Voithenberg LV, Kaigala GV (2018) Fluorescence in situ hybridization (FISH): history, limitations and what to expect from micro-scale FISH? Micro Nano Eng 1:15–24

Article  Google Scholar 

Jia X, Xu J, Liu L, Liang X, He Y, Han L et al (2024) Strategies for enhancing short-and medium-chain fatty acids synthesis from corn stover-based sugar: A new perspective on co-culture. J Environ Chem Eng 12(6):114836

Article  Google Scholar 

Kapoore RV, Padmaperuma G, Maneein S, Vaidyanathan S (2022) Co-culturing microbial consortia: approaches for applications in biomanufacturing and bioprocessing. Crit Rev Biotechnol 42(1):46–72

Article  PubMed  Google Scholar 

Kawai R, Toya Y, Miyoshi K, Murakami M, Niide T, Horinouchi T et al (2022) Acceleration of target production in co-culture by enhancing intermediate consumption through adaptive laboratory evolution. Biotechnol Bioeng 119(3):936–945

Article  PubMed  Google Scholar 

Kerckhof F, Sakarika M, Van Giel M, Muys M, Vermeir P, De Vrieze J et al (2021) From biogas and hydrogen to microbial protein through co-cultivation of methane and hydrogen oxidizing bacteria. Front Bioeng Biotechnol 9:733753

Article  PubMed  PubMed Central  Google Scholar 

Köhler S, Schmacht M, Troubounis AH, Ludszuweit M, Rettberg N, Senz M (2021) Tradition as a stepping stone for a microbial defined water Kefir fermentation process: insights in cell growth, bioflavoring, and sensory perception. Front Microbiol 12:732019

Article  PubMed  PubMed Central  Google Scholar 

Kralik P, Ricchi M (2017) A basic guide to real time PCR in microbial diagnostics: definitions, parameters, and everything. Front Microbiol 8:108

Article  PubMed  PubMed Central  Google Scholar 

Kruse S, Becker S, Pierre F, Morlock GE (2023) Metabolic profiling of bacterial co-cultures reveals intermicrobiome interactions and dominant species. J Chromatogr A 1694:463911

Article  PubMed  Google Scholar 

Kumar A, Techapun C, Sommanee S, Mahakuntha C, Feng J, Htike SL et al (2023) Production of phenylacetylcarbinol via biotransformation using the co-culture of Candida tropicalis TISTR 5306 and Saccharomyces cerevisiae TISTR 5606 as the biocatalyst. J Fungi 9(9):928

Article  Google Scholar 

Latif A, Shehzad A, Niazi S, Zahid A, Ashraf W, Iqbal MW et al (2023) Probiotics: mechanism of action, health benefits and their application in food industries. Front Microbiol 14:1216674

Article  PubMed