Exploration of N6-methyladenosine modification in ascorbic acid 2-glucoside constructed stem cell sheets

Arabpour M, Saghazadeh A, Rezaei N, Anti-inflammatory (2021) M2 macrophage polarization-promoting effect of mesenchymal stem cell-derived exosomes. Int Immunopharmacol 97:107823. https://doi.org/10.1016/j.intimp.2021.107823

Article  CAS  PubMed  Google Scholar 

Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25(1):25–29. https://doi.org/10.1038/75556

Article  CAS  PubMed  PubMed Central  Google Scholar 

Barthes J, Özçelik H, Hindié M, Ndreu-Halili A, Hasan A, Vrana NE (2014) Cell microenvironment engineering and monitoring for tissue engineering and regenerative medicine: the recent advances. Biomed Res Int 2014:921905. https://doi.org/10.1155/2014/

Article  PubMed  PubMed Central  Google Scholar 

Benincasa G, Viglietti M, Coscioni E, Napoli C (2023) Transplantomics for predicting allograft rejection: real-life applications and new strategies from Network Medicine. Hum Immunol 84(2):89–97. https://doi.org/10.1016/j.humimm.2022.11.004

Article  CAS  PubMed  Google Scholar 

Chen J, Guo L, Zhang L, Wu H, Yang J, Liu H, Wang X, Hu X, Gu T, Zhou Z, Liu J, Liu J, Wu H, Mao SQ, Mo K, Li Y, Lai K, Qi J, Yao H, Pan G, Xu GL, Pei D (2013) Vitamin C modulates TET1 function during somatic cell reprogramming. Nat Genet 45(12):1504–1509. https://doi.org/10.1038/ng.2807

Article  CAS  PubMed  Google Scholar 

Chen T, Hao YJ, Zhang Y, Li MM, Wang M, Han W, Wu Y, Lv Y, Hao J, Wang L, Li A, Yang Y, Jin KX, Zhao X, Li Y, Ping XL, Lai WY, Wu LG, Jiang G, Wang HL, Sang L, Wang XJ, Yang YG, Zhou Q (2015) M(6)a RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency. Cell Stem Cell 16(3):289–301. https://doi.org/10.1016/j.stem.2015.01.016

Article  CAS  PubMed  Google Scholar 

Chen J, Lan J, Liu D, Backman LJ, Zhang W, Zhou Q, Danielson P (2017) Ascorbic acid promotes the stemness of corneal epithelial Stem/Progenitor cells and accelerates epithelial Wound Healing in the Cornea. Stem Cells Transl Med 6(5):1356–1365. https://doi.org/10.1002/sctm.16-0441

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen S, Zhou Y, Chen Y, Gu J (2018) Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17):i884–i890. https://doi.org/10.1093/bioinformatics/bty560

Article  CAS  PubMed  PubMed Central  Google Scholar 

DePhillipo NN, Aman ZS, Kennedy MI, Begley JP, Moatshe G, LaPrade RF (2018) Efficacy of vitamin C supplementation on Collagen Synthesis and oxidative stress after Musculoskeletal injuries: a systematic review. Orthop J Sports Med 6(10):2325967118804544. https://doi.org/10.1177/2325967118804544

Article  PubMed  PubMed Central  Google Scholar 

Dunn JLM, Rothenberg ME (2022) 2021 year in review: spotlight on eosinophils. J Allergy Clin Immunol 149(2):517–524. https://doi.org/10.1016/j.jaci.2021.11.012

Article  CAS  PubMed  Google Scholar 

Ernst J, Bar-Joseph Z (2006) BMC Bioinformatics 7:191. https://doi.org/10.1186/1471-2105-7-191. STEM: a tool for the analysis of short time series gene expression data

Esteban MA, Wang T, Qin B, Yang J, Qin D, Cai J, Li W, Weng Z, Chen J, Ni S, Chen K, Li Y, Liu X, Xu J, Zhang S, Li F, He W, Labuda K, Song Y, Peterbauer A, Wolbank S, Redl H, Zhong M, Cai D, Zeng L, Pei D (2010) Vitamin C enhances the generation of mouse and human induced pluripotent stem cells. Cell Stem Cell 6(1):71–79. 10.1016/ j.stem.2009.12.001

Article  CAS  PubMed  Google Scholar 

Franz M, Rodriguez H, Lopes C, Zuberi K, Montojo J, Bader GD, Morris Q (2018) GeneMANIA update 2018. Nucleic Acids Res 46(W1):W60–W64. https://doi.org/10.1093/nar/gky311

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hu D, Li X, Li J, Tong P, Li Z, Lin G, Sun Y, Wang J (2023) The preclinical and clinical progress of cell sheet engineering in regenerative medicine. Stem Cell Res Ther 14(1):112. https://doi.org/10.1186/s13287-023-03340-5

Article  PubMed  PubMed Central  Google Scholar 

Huang HY, Lin YC, Cui S, Huang Y, Tang Y, Xu J, Bao J, Li Y, Wen J, Zuo H, Wang W, Li J, Ni J, Ruan Y, Li L, Chen Y, Xie Y, Zhu Z, Cai X, Chen X, Yao L, Chen Y, Luo Y, LuXu S, Luo M, Chiu CM, Ma K, Zhu L, Cheng GJ, Bai C, Chiang YC, Wang L, Wei F, Lee TY, Huang HD (2022) miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. Nucleic Acids Res 50(D1):D222–D230. https://doi.org/10.1093/nar/gkab1079

Article  CAS  PubMed  Google Scholar 

Jenkins PJ, Bustin SA (2004) Evidence for a link between IGF-I and cancer. Eur J Endocrinol 151(Suppl 1):S17–22. https://doi.org/10.1530/eje.0.151s017

Article  CAS  PubMed  Google Scholar 

Kim D, Langmead B, Salzberg SL (2015) HISAT: a fast spliced aligner with low memory requirements. Nat Methods 12(4):357–360. https://doi.org/10.1038/nmeth.3317

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kishimoto Y, Saito N, Kurita K, Shimokado K, Maruyama N, Ishigami A (2013) Ascorbic acid enhances the expression of type 1 and type 4 collagen and SVCT2 in cultured human skin fibroblasts. Biochem Biophys Res Commun 430(2):579–584. https://doi.org/10.1016/j.bbrc.2012.11.110

Article  CAS  PubMed  Google Scholar 

Kobayashi J, Kikuchi A, Aoyagi T, Okano T (2019) Cell sheet tissue engineering: cell sheet preparation, harvesting/manipulation, and transplantation. J Biomed Mater Res A 107(5):955–967. https://doi.org/10.1002/jbm.a.36627

Article  CAS  PubMed  Google Scholar 

Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9(4):357–359. https://doi.org/10.1038/nmeth.1923

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lee S, Lim J, Lee JH, Ju H, Heo J, Kim Y, Kim S, Yu HY, Ryu CM, Lee SY, Han JM, Oh YM, Lee H, Jang H, Yoon TJ, Ahn HS, Kim K, Kim HR, Roe JS, Chung HM, Son J, Kim JS, Shin DM (2020) Ascorbic acid 2-Glucoside stably promotes the primitiveness of embryonic and mesenchymal stem cells through ten-Eleven translocation- and cAMP-Responsive element-binding protein-1-Dependent mechanisms. Antioxid Redox Signal 32(1):35–59. https://doi.org/10.1089/ars.2019.7743

Article  CAS  PubMed  Google Scholar 

Li L, Lei Q, Zhang S, Kong L, Qin B (2017) Screening and identification of key biomarkers in hepatocellular carcinoma: evidence from bioinformatic analysis. Oncol Rep 38(5):2607–2618. https://doi.org/10.3892/or.2017.5946

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liang Z, Ye H, Ma J, Wei Z, Wang Y, Zhang Y, Huang D, Song B, Meng J, Rigden DJ, Chen K (2024) m6A-Atlas v2.0: updated resources for unraveling the N6-methyladenosine (m6A) epitranscriptome among multiple species. Nucleic Acids Res 52(D1):D194–D202. https://doi.org/10.1093/nar/gkad691

Article  PubMed  Google Scholar 

Liu Y, Xu S, Zu T, Li F, Sang S, Liu C, An Y, Mi B, Orgill DP, Murphy GF, Lian CG (2019) Reversal of TET-mediated 5-hmC loss in hypoxic fibroblasts by ascorbic acid. Lab Invest 99(8):1193–1202. https://doi.org/10.1038/s41374-019-0235-8

Article  CAS  PubMed  Google Scholar 

Liu J, Gao J, Liang Z, Gao C, Niu Q, Wu F, Zhang L (2022a) Mesenchymal stem cells and their microenvironment. Stem Cell Res Ther 13(1):429. https://doi.org/10.1186/s13287-022-02985-y

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Z, Zou H, Dang Q, Xu H, Liu L, Zhang Y, Lv J, Li H, Zhou Z, Han X (2022b) Biological and pharmacological roles of m6A modifications in cancer drug resistance. Mol Cancer 21(1):220. https://doi.org/10.1186/s12943-022-01680-z

Article  CAS  PubMed  PubMed Central  Google Scholar 

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