Bazin E, Glémin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science 312(5773):570–572. https://doi.org/10.1126/science.1122033

Article  CAS  PubMed  Google Scholar 

Beier S, Thiel T, Münch T, Scholz U, Mascher M, Valencia A (2017) MISA-web: a web server for microsatellite prediction. Bioinformatics 33(16):2583–2585. https://doi.org/10.1093/bioinformatics/btx198

Article  CAS  PubMed  PubMed Central  Google Scholar 

Coart E, Van Glabeke S, De Loose M, Larsen AS, Roldan-Ruiz I (2006) Chloroplast diversity in the genus Malus: new insights into the relationship between the European wild apple (Malus sylvestris (L.) Mill.) and the domesticated apple (Malus domestica Borkh.). Mol Ecol 15(8):2171–2182. https://doi.org/10.1111/j.1365-294X.2006.02924.x

Article  CAS  PubMed  Google Scholar 

de Vere N, Rich Tc Fau - Trinder, Sarah A, Trinder Sa Fau - Long, Charlotte, Long C (2015) DNA barcoding for plants, Methods Mol Biol, 1245 (1940–6029 (Electronic)): 101–118.https://doi.org/10.1007/978-1-4939-1966-6_8

Fagen L, Nianhe X (2005) Population structure and genetic diversity of an endangered species, Glyptostrobus pensilis (Cupressaceae). J Bot Bull Acad Sin 46:155–162

Google Scholar 

Huang J, Yu Y, Liu Y-M, Xie D-F, He X-J, Zhou S-D (2020) Comparative chloroplast genomics of Fritillaria (Liliaceae), inferences for phylogenetic relationships between Fritillaria and Lilium and plastome evolution. Plants 9(2):133–147. https://doi.org/10.3390/plants9020133

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang D, Zhao Z, Zhang T, Zhong W, Liu C, Yuan Q, Huang L (2017) The chloroplast genome sequence of Scutellaria baicalensis provides insight into intraspecific and interspecific chloroplast genome diversity in Scutellaria. Genes 8(9):227–239. https://doi.org/10.3390/genes8090227

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kehie M, Kumaria S, Devi KS, Tandon P (2016) Genetic diversity and molecular evolution of Naga King Chili inferred from internal transcribed spacer sequence of nuclear ribosomal DNA. Meta Gene 7:56–63. https://doi.org/10.1016/j.mgene.2015.11.006

Article  PubMed  Google Scholar 

Kim JH, Jung J-Y, Choi H-I, Kim N-H, Park JY, Lee Yi, Yang T-J (2012) Diversity and evolution of major Panax species revealed by scanning the entire chloroplast intergenic spacer sequences. Genet Resour Crop Evol 60(2):413–425. https://doi.org/10.1007/s10722-012-9844-4

Article  Google Scholar 

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23(21):2947–2948. https://doi.org/10.1093/bioinformatics/btm404

Article  CAS  PubMed  Google Scholar 

Li Y, Zhang Z, Yang J, Lv G (2018) Complete chloroplast genome of seven Fritillaria species, variable DNA markers identification and phylogenetic relationships within the genus. PLoS One 13(3):e0194613. https://doi.org/10.1371/journal.pone.0194613

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li J, Xie D-F, Guo X-L, Zheng Z-Y, He X-J, Zhou S-D (2020) Comparative analysis of the complete plastid genome of five Bupleurum species and new insights into DNA barcoding and phylogenetic relationship. Plants 9(4):543–562. https://doi.org/10.3390/plants9040543

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu C, Chang J Fau - Zhang, Li, Zhang L Fau - Zhang, Jie, Zhang J Fau - Li, Shengyu, Li S (2012) Purification and antioxidant activity of a polysaccharide from bulbs of Fritillaria ussuriensis Maxim. Int J Biol Macromol 50(4):1075-1080. https://doi.org/10.1016/j.ijbiomac.2012.03.006

Lynch M, Conery JS (2003) The origins of genome complexity. Science 302(5649):1401–1404. https://doi.org/10.1126/science.1089370

Article  CAS  PubMed  Google Scholar 

Meng J, Li X, Li H, Yang J, Wang H, He J (2018) Comparative analysis of the complete chloroplast genomes of four Aconitum medicinal species. Molecules 23(5). https://doi.org/10.3390/molecules23051015

Nock CJ, Waters DL, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ (2011) Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnol J 9(3):328–333. https://doi.org/10.1111/j.1467-7652.2010.00558.x

Article  CAS  PubMed  Google Scholar 

Park I, Kim W, Yeo S-M, Choi G, Kang Y-M, Piao R, Moon B (2017) The complete chloroplast genome sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and comparative analysis with other Fritillaria species. Molecules 22(6):982–996. https://doi.org/10.3390/molecules22060982

Article  CAS  PubMed  PubMed Central  Google Scholar 

Posada D, Fau - Crandall KA, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks, Trends Ecol Evol, 16 (1872–8383 (Electronic)): 37–45. https://doi.org/10.1016/s0169-5347(00)02026-7

Reusch TB, Ehlers A, Hämmerli A, Worm B (2005) Ecosystem recovery after climatic extremes enhanced by genotypic diversity. Proc Natl Acad Sci U S A 102(8):2826–2831. https://doi.org/10.1073/pnas.0500008102

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol 34(12):3299–3302. https://doi.org/10.1093/molbev/msx248

Article  CAS  PubMed  Google Scholar 

Sally Rahayu YY (2023) Assessing adoption of DNA barcoding in herbal value chain: a multistakeholder analysis. Nat Prod J 13(6):54–62. https://doi.org/10.2174/2210315513666220928112238

Article  CAS  Google Scholar 

Seo J-Y, Kim J-S, Kim K-L (2018) Anti-inflammatory effects and innate immunity suppression by Fritillaria ussuriensis extracts. Asian J Beauty Cosmetol 16(1):10–19. https://doi.org/10.20402/ajbc.2017.0145

Article  Google Scholar 

Stenfan Kurtz, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R (2001) REPuter the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res 29:4633–4642. https://doi.org/10.1093/nar/29.22.4633

Article  PubMed  Google Scholar 

Vladimir M, Pierre L, Yves D (2004) Modelling phylogenetic relationships using reticulated networks. Zool Scr 33:89–96. https://doi.org/10.1111/j.1463-6409.2004.00141.x

Article  Google Scholar 

Wang S-H, Bao L, Wang T-M, Wang H-F, Ge J-P (2016) Contrasting genetic patterns between two coexisting Eleutherococcus species in northern China. Ecol Evol 6(10):3311–3324. https://doi.org/10.1002/ece3.2118

Article  PubMed  PubMed Central  Google Scholar 

Wang Z, Cao F, Chen Y, Tang Z, Wang Z (2018) Simultaneous determination and pharmacokinetics of peimine and peiminine in beagle dog plasma by UPLC-MS/MS after the oral administration of Fritillariae ussuriensis Maxim and Fritillariae thunbergii Miq powder. Molecules 23(7):1573–1586. https://doi.org/10.3390/molecules23071573

Article  CAS  PubMed  PubMed Central  Google Scholar 

Whittall JB, Syring J Fau - Parks M, Parks M Fau - Buenrostro J, Buenrostro J Fau - Dick C, Dick C Fau - Liston A, Liston A Fau - Cronn R, Cronn R (2010) Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines, Mol Ecol, 19 (1365–294X (Electronic)): 100–114.https://doi.org/10.1111/j.1365-294X.2009.04474.x

Yang L, Zhang M, Yang T, Ming W, Tse WG, Kathy T, Ye B (2021) LC–MS/MS coupled with chemometric analysis as an approach for the differentiation of bulbus Fritillaria unibracteata and Fritillaria ussuriensis. Phytochem Anal 32(6):957–969. https://doi.org/10.1002/pca.3038

Article  CAS  PubMed  Google Scholar 

Yi D-K, Lee H-L, Sun B-Y, Chung MY, Kim K-J (2012) The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); comparative evolutionary analyses with other three asterids. Mol Cells 33(5):497–508. https://doi.org/10.1007/s10059-012-2281-6

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhang X, Liu Y, Gu X, Guo Z, Li L, Song X, Liu S, Zang Y, Li Y, Liu C, Wei S (2014) Genetic diversity and population structure of Rheum tanguticum (Dahuang) in China. Chin Med 9(1):26. https://doi.org/10.1186/1749-8546-9-26

Article  PubMed  PubMed Central  Google Scholar 

Zhang T, Huang S, Song S, Zou M, Yang T, Wang W, Zhou J, Liao H (2021) Identification of evolutionary relationships and DNA markers in the medicinally important genus Fritillaria based on chloroplast genomics. PeerJ 9:e12612. https://doi.org/10.7717/peerj.12612

Article  CAS  PubMed  PubMed Central  Google Scholar