Zavilgelsky G.B., Rastorguev S.M. 2007. DNA mimicry by proteins as effective mechanism for regulation of activity of DNA-dependent enzymes. Biochemistry (Moscow). 72 (9), 913–919.

CAS  PubMed  Google Scholar 

Kotova V.I., Zavil’gel’skiĭ G.B., Belogurov A.A. 1988. Alleviation of type I restriction in the presence of plasmids of group Inc I. General characteristics and molecular cloning of the ard gene. Mol. Biol. (Moscow). 22 (1), 270–276.

CAS  Google Scholar 

McMahon S.A., Roberts G.A., Johnson K.A., Cooper L.P., Liu H., White J.H., Carter L.G., Sanghvi B., Oke M., Walkinshaw M.D., Blakely G.W., Naismith J.H., Dryden D.T.F. 2009. Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance. Nucleic Acids Res. 37 (15), 4887–4897.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Roberts G.A., Stephanou A.S., Kanwar N., Dawson A., Cooper L.P., Chen K., Nutley M., Cooper A., Blakely G.W., Dryden D.T.F. 2012. Exploring the DNA mimicry of the Ocr protein of phage T7. Nucleic Acids Res. 40 (16), 8129–8143.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zavil’gelskiĭ G.B., Kotova V.Iu. 2014. Antirestriction activity of T7 Ocr protein in monomeric and dimeric forms. Mol. Biol. (Moscow). 48 (1), 150–157.

Article  Google Scholar 

Rastorguev S.M., Zavilgelsky G.B. 2003. Role of “antirestriction” motif in functional activity of antirestriction protein ArdA pKM101 (IncN). Russ. J. Genet. 39 (2), 286–292.

Article  CAS  Google Scholar 

Stephanou A.S., Roberts G.A., Tock M.R., Pritchard E.H., Turkington R., Nutley M., Cooper A., Dryden D.T.F. 2009. A mutational analysis of DNA mimicry by ocr, the gene 0.3 antirestriction protein of bacteriophage T7. Biochem. Biophys. Res. Commun. 378 (1), 129–132.

Article  CAS  PubMed  Google Scholar 

Belogurov A.A., Yussifov T.N., Kotova V.U., Zavilgelsky G.B. 1985. The novel gene(s) ARD of plasmid pKM101: Alleviation of EcoK restriction. MGG Mol. Gen. Genet. 198, 509–513.

Article  CAS  PubMed  Google Scholar 

Gladysheva-Azgari M.V., Sharko F.S., Evteeva M.A., Kuvyrchenkova A.P., Boulygina E.S., Tsygankova S.V., Slobodova N.V., Pustovoit K.S., Melkina O.E., Nedoluzhko A.V., Korzhenkov A.A., Kudryavtseva A.A., Utkina A.A., Manukhov I.V., Rastorguev S.M., Zavilgelsky G.B. 2023. ArdA genes from pKM101 and from B. bifidum chromosome have a different range of regulated genes. Heliyon. 9 (12), e22986.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kudryavtseva A.A., Cséfalvay E., Gnuchikh E.Y., Yanovskaya D.D., Skutel M.A., Isaev A.B., Bazhenov S.V., Utkina A.A., Manukhov I.V. 2023. Broadness and specificity: ArdB, ArdA, and Ocr against various restriction−modification systems. Front. Microbiol. 14, 1133144. https://doi.org/10.3389/fmicb.2023.1133144

Article  PubMed  PubMed Central  Google Scholar 

Kudryavtseva A.A., Alekhin V.A., Lebedeva M.D., Cséfalvay E., Weiserova M., Manukhov I.V. 2023. Anti-restriction activity of ArdB protein against EcoAI endonuclease. Mol. Biol. (Moscow). 57 (1), 101–104.

Article  CAS  Google Scholar 

Patel J., Taylor I., Dutta C.F., Kneale G., Firman K. 1992. High-level expression of the cloned genes encoding the subunits of and intact DNA methyltransferase, MEcoR124. Gene. 112 (1), 21–27.

Article  CAS  PubMed  Google Scholar 

Mirdita M., Schütze K., Moriwaki Y., Heo L., Ovchinnikov S., Steinegger M. 2022. ColabFold: Making protein folding accessible to all. Nat. Methods. 19 (6), 679–682.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jumper J., Evans R., Pritzel A., Green T., Figurnov M., Ronneberger O., Tunyasuvunakool K., Bates R., Žídek A., Potapenko A., Bridgland A., Meyer C., Kohl S.A.A., Ballard A.J., Cowie A., Romera-Paredes B., Nikolov S., Jain R., Adler J., Back T., Petersen S., Reiman D., Clancy E., Zielinski M., Steinegger M., Pacholska M., Berghammer T., Bodenstein S., Silver D., Vinyals O., Senior A.W., Kavukcuoglu K., Kohli P., Hassabis D. 2021. Highly accurate protein structure prediction with AlphaFold. Nature. 596 (7873), 583–589.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Evans R., O’Neill M., Pritzel A., Antropova N., Senior A., Green T., Žídek A., Bates R., Blackwell S., Yim J., Ronneberger O., Bodenstein S., Zielinski M., Bridgland A., Potapenko A., Cowie A., Tunyasuvunakool K., Jain R., Clancy E., Kohli P., Jumper J., Hassabis D. 2022. Protein complex prediction with AlphaFold-Multimer. bioRxiv. https://doi.org/ https://doi.org/10.1101/2021.10.04.463034

Belogurov A.A., Delver E.P., Rodzevich O.V. 1993. Plasmid pKM101 encodes two nonhomologous antirestriction proteins (ArdA and ArdB) whose expression is controlled by homologous regulatory sequences. J. Bacteriol. 175 (15), 4843–4850.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Price C., Lingner J., Bickle T.A., Firman K., Glover S.W. 1989. Basis for changes in DNA recognition by the EcoR124 and EcoR 124 3 type I DNA restriction and modification enzymes. J. Mol. Biol. 205, 115–125.

Article  CAS  PubMed  Google Scholar 

Skutel M., Andriianov A., Zavialova M., Kirsanova M., Shodunke O., Zorin E., Golovshchinskii A., Severinov K., Isaev A. 2023. T5-like phage BF23 evades host-mediated DNA restriction and methylation. microLife. 4, uqad044.

Liu Y.P., Tang Q., Zhang J.Z., Tian L.F., Gao P., Yan X.X. 2017. Structural basis underlying complex assembly and conformational transition of the type I R-M system. Proc. Natl. Acad. Sci. U. S. A. 114 (42), 11151–11156.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mol C.D., Arvai A.S., Sanderson R.J., Slupphaug G., Kavli B., Krokan H.E., Mosbaugh D.W., Tainer J.A. 1995. Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA. Cell. 82 (5), 701–708.

Article  CAS  PubMed  Google Scholar 

Ramirez B.E., Bax A., Voloshin O.N., Camerini-otero RD 2000. Solution structure of DinI provides insight into its mode of RecA inactivation. Protein Sci. 9 (11), 2161–2169.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Parsons L.M., Liu F., Orban J. 2009. HU-α binds to the putative double-stranded DNA mimic HI1450 from Haemophilus influenzae. Protein Sci. 14 (6), 1684–1687.

Article  Google Scholar 

Belogurov A.A., Delver E.P., Rodzevich O.V. 1992. IncN plasmid pKM101 and IncI1 plasmid ColIb-P9 encode homologous antirestriction proteins in their leading regions. J. Bacteriol. 174 (15), 5079–5085.

Article  CAS  PubMed  PubMed Central  Google Scholar