Abbas A, Shah AN, Tanveer M, Ahmed W, Shah AA, Fiaz S, Waqas MM, Ullah S (2022) MiRNA fine tuning for crop improvement: using advance computational models and biotechnological tools. Mol Biol Rep 49(6):5437–5450. https://doi.org/10.1007/s11033-022-07231-5
Article PubMed CAS Google Scholar
Afreen U, Pandey A, Jha SK, Kumar M, Mukhopadhyay K (2024) Comprehensive analysis of hairpin small RNAs involved in resistance and pathogenesis during wheat–Puccinia triticina interactions. Physiol Plant 176(5):e14516. https://doi.org/10.1111/ppl.14516
Article PubMed CAS Google Scholar
Alptekin B, Akpinar BA, Budak H (2017) A comprehensive prescription for plant miRNA identification. Front Plant Sci 7. https://doi.org/10.3389/fpls.2016.02058
Ashwal-Fluss R, Meyer M, Pamudurti NR, Ivanov A, Bartok O, Hanan M, Evantal N, Memczak S, Rajewsky N, Kadener S (2014) CircRNA biogenesis competes with pre-mRNA splicing. Mol Cell 56(1):55–66. https://doi.org/10.1016/j.molcel.2014.08.019
Article PubMed CAS Google Scholar
Aslam MM, Waseem M, Jakada BH, Okal EJ, Lei Z, Saqib HSA, Zhang Q (2022) Mechanisms of abscisic acid-mediated drought stress responses in plants. Int J Mol Sci 23(3):1084. https://doi.org/10.3390/ijms23031084
Axtell MJ (2013) Classification and comparison of small RNAs from plants. Annu Rev Plant Biol 64:137–159. https://doi.org/10.1146/annurev-arplant-050312-120043
Article PubMed CAS Google Scholar
Baek MW, Choi HR, Lee HC, Lee JH, Lee OH, Hong JS, Jeong CS, Tilahun S (2023) Preharvest methyl jasmonate and salicylic acid treatments improve the nutritional qualities and postharvest storability of tomato. Sci Hort 321:112332. https://doi.org/10.1016/j.scienta.2023.112332
Bhogireddy S, Mangrauthia SK, Kumar R, Pandey AK, Singh S, Jain A, Budak H, Varshney RK, Kudapa H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Funct Integr Genomics 21(3–4):313–330. https://doi.org/10.1007/s10142-021-00787-8
Article PubMed PubMed Central CAS Google Scholar
Bolton MD, Kolmer JA, Garvin DF (2008) Wheat leaf rust caused by Puccinia Triticina. Mol Plant Pathol 9(5):563–575. https://doi.org/10.1111/j.1364-3703.2008.00487.x
Article PubMed PubMed Central Google Scholar
Brant EJ, Budak H (2018) Plant small non-coding RNAs and their roles in biotic stresses. Front Plant Sci 9:1038
Article PubMed PubMed Central Google Scholar
Budak H, Akpinar BA, Genomics (2015) Plant miRNAs: biogenesis, organization and origins. Funct Integr Genom 15(5):523–31. https://doi.org/10.1007/s10142-015-0451-2
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett JF, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55(4):611–622. https://doi.org/10.1373/clinchem.2008.112797
Article PubMed CAS Google Scholar
Cao W, Yang L, Zhuang M, Lv H, Wang Y, Zhang Y, Ji J (2024) Plant non-coding RNAs: the new frontier for the regulation of plant development and adaptation to stress. Plant Physiol Biochem 108435. https://doi.org/10.1016/j.plaphy.2024.108435
Chao J, Li Z, Sun Y, AlukoOO WuX, Wang Q, Liu G (2021) MG2C: a user-friendly online tool for drawing genetic maps. Mol Horticulture 1:16. https://doi.org/10.1186/s43897-021-00020-x
Chauhan D, Mishra DC, Balley P, Bhati J, Pandey H, Khan S (2024) Emphasizing the role of wheat circular RNA in defense response against stripe rust disease. J Plant Biochem Biotechnol 1–12. https://doi.org/10.1007/s13562-024-00889-x
Chen LL (2016) The biogenesis and emerging roles of circular RNAs. Nat Rev Mol Cell Biol 17(4):205–211. https://doi.org/10.1038/nrm.2015.32
Article PubMed CAS Google Scholar
Cherukuri DP, Gupta SK, Charpe A, Koul S, Prabhu KV, Singh RB, Haq QMR (2005) Molecular mapping of Aegilops speltoides derived leaf rust resistance gene Lr28 in wheat. Euphytica 143:19–26. https://doi.org/10.1007/s10681-005-1680-6
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2:2366–2382. https://doi.org/10.1038/nprot.2007.324
Article PubMed PubMed Central CAS Google Scholar
Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21(18):3674–3676. https://doi.org/10.1093/bioinformatics/bti610
Dai X, Zhao PX (2011) psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 39(suppl_2):W155–W159. https://doi.org/10.1093/nar/gkr319
Darbani B, Noeparvar S, Borg S (2016) Identification of circular RNAs from the parental genes involved in multiple aspects of cellular metabolism in barley. Front Plant Sci 7:776. https://doi.org/10.3389/fpls.2016.00776
Article PubMed PubMed Central Google Scholar
Deng F, Zhang X, Wang W, Yuan R, Shen F (2018) Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress. BMC Plant Biol 18(1):23. https://doi.org/10.1186/s12870-018-1238-0
Article PubMed PubMed Central CAS Google Scholar
Deng F, Zeng F, Shen Q, Abbas A, Cheng J, Jiang W, Chen G, Shah AN, Holford P, Tanveer M, Jhang D, Chen Z (2022) Molecular evolution and functional modification of plant miRNAs with CRISPR. Trends Plant Sci 27(9):890–907. https://doi.org/10.1016/j.tplants.2022.01.009
Article PubMed CAS Google Scholar
Desmond OJ, Edgar CI, Manners JM, Maclean DJ, Schenk PM, Kazan K (2005) Methyl jasmonate induced gene expression in wheat delays symptom development by the crown rot pathogen Fusarium pseudo graminearum. Physiol Mol Plant Pathol 67(3–5):171–179. https://doi.org/10.1016/j.pmpp.2005.12.007
Dhandhanya UK, Mukhopadhyay K, Kumar M (2024) An accretive detection method for in silico identification and validation of circular RNAs in wheat (Triticum aestivum L.) using RT-qPCR. Mol Biol Rep 51(1):162. https://doi.org/10.1007/s11033-023-09138-1
Article PubMed CAS Google Scholar
El-Wakeil NE, Volkmar C, Sallam AA (2010) Jasmonic acid induces resistance to economically important insect pests in winter wheat. Pest Manage Sci: Former Pesticide Sci 66(5):549–554. https://doi.org/10.1002/ps.1906
Ellis C, Karafyllidis I, Wasternack C, Turner JG (2002) The Arabidopsis mutant cev1 links cell wall signaling to jasmonate and ethylene responses. Plant Cell 14(7):1557–1566
Article PubMed PubMed Central CAS Google Scholar
Feng H, Wang B, Zhang Q, Fu Y, Huang L, Wang X, Kang Z (2015) Exploration of microRNAs and their targets engaging in the resistance interaction between wheat and stripe rust. Front Plant Sci 6:469. https://doi.org/10.3389/fpls.2015.00469
Article PubMed PubMed Central Google Scholar
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, García JA, Paz-Ares J (2007) Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 39(8):1033–1037. https://doi.org/10.1038/ng2079
Article PubMed CAS Google Scholar
Gao Y, Wang J, Zhao F (2015) CIRI: an efficient and unbiased algorithm for de novo circular RNA identification. Genome Biol 16(1):1–16. https://doi.org/10.1186/s13059-014-0571-3
Ghorbani A, Izadpanah K, Tahmasebi A, Afsharifar A, Moghadam A, Dietzgen RG (2022) Characterization of maize miRNAs responsive to maize Iranian mosaic virus infection. 3 Biotech 12(3). https://doi.org/10.1007/s13205-022-03134-1
Guerreiro A, Figueiredo J, Silva MS, Figueiredo A (2016) Linking jasmonic acid to grapevine resistance against the biotrophic oomycetes plasmoparaviticola. Front Plant Sci 7. https://doi.org/10.3389/fpls.2016.00565
Hansen TB, Jensen TI, Clausen BH, Bramsen JB, Finsen B, Damgaard CK, Kjems J (2013) Natural RNA circles function as efficient microRNA sponges. Nature 495(7441):384–388. https://doi.org/10.1038/nature11993
Article PubMed CAS Google Scholar
Huang J, Wang Y, Yu J, Li F, Yi L, Li Y, Xie N, Wu Q, Samarina L, Tong W, Xia E (2023) Evolutionary landscape of tea circular RNAs and its contribution to chilling tolerance of tea plant. Int J Mol Sci 24(2):1478.
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