Park JW, Lee E, Lee SJ, Lee H. Status of carbapenemase-producing Enterobacteriaceae incidences in Korea, 2015–2016. Public Health Wkly Rep. 2017;10:1243–7.
Lim J, Sim J, Lee H, Hyun J, Lee S, Park S. Characteristics of Carbapenem-resistant Enterobacteriaceae (CRE) in the Republic of Korea, 2022. Public Health Wkly Rep. 2024;17:115–27.
Papagiannitsis CC, Dolejska M, Izdebski R, Giakkoupi P, Skalova A, Chudejova K, et al. Characterisation of IncA/C2 plasmids carrying an In416-like integron with the blaVIM-19 gene from Klebsiella pneumoniae ST383 of Greek origin. Int J Antimicrob Agents. 2016;47:158–62.
Article PubMed CAS Google Scholar
Park SH, Yi Y, Suh W, Ji SK, Han E, Shin S. The impact of enhanced screening for carbapenemase-producing enterobacterales in an acute care hospital in South Korea. Antimicrob Resist Infect Control. 2023;12:62.
Article PubMed PubMed Central Google Scholar
Thomson GK, Snyder JW, McElheny CL, Thomson KS, Doi Y. Coproduction of KPC-18 and VIM-1 carbapenemases by Enterobacter cloacae: implications for newer beta-lactam-beta-lactamase inhibitor combinations. J Clin Microbiol. 2016;54:791–4.
Article PubMed PubMed Central CAS Google Scholar
Villa J, Arana DM, Viedma E, Perez-Montarelo D, Chaves F. Characterization of mobile genetic elements carrying VIM-1 and KPC-2 carbapenemases in Citrobacter freundii isolates in Madrid. Int J Med Microbiol. 2017;307:340–5.
Article PubMed CAS Google Scholar
Protonotariou E, Poulou A, Politi L, Sgouropoulos I, Metallidis S, Kachrimanidou M, et al. Hospital outbreak due to a Klebsiella pneumoniae ST147 clonal strain co-producing KPC-2 and VIM-1 carbapenemases in a tertiary teaching hospital in Northern Greece. Int J Antimicrob Agents. 2018;52:331–7.
Article PubMed CAS Google Scholar
Steinmann J, Kaase M, Gatermann S, Popp W, Steinmann E, Damman M et al. Outbreak due to a Klebsiella pneumoniae strain harbouring KPC-2 and VIM-1 in a German university hospital, July 2010 to January 2011. Euro surveillance: bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 2011;16.
Poirel L, Walsh TR, Cuvillier V, Nordmann P. Multiplex PCR for detection of acquired carbapenemase genes. Diagn Microbiol Infect Dis. 2011;70:119–23.
Article PubMed CAS Google Scholar
Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A. Using SPAdes De Novo Assembler. Curr Protoc Bioinf. 2020;70:e102.
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30:2068–9.
Article PubMed CAS Google Scholar
Lam MMC, Wick RR, Watts SC, Cerdeira LT, Wyres KL, Holt KE. A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nat Commun. 2021;12:4188.
Article PubMed PubMed Central CAS Google Scholar
Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, et al. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 2023;51:D690–9.
Article PubMed CAS Google Scholar
Neron B, Littner E, Haudiquet M, Perrin A, Cury J, Rocha EPC. IntegronFinder 2.0: identification and analysis of integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella. Microorganisms. 2022;10.
Johansson MHK, Bortolaia V, Tansirichaiya S, Aarestrup FM, Roberts AP, Petersen TN. Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder. J Antimicrob Chemother. 2021;76:101–9.
Article PubMed CAS Google Scholar
Carattoli A, Zankari E, Garcia-Fernandez A, Voldby Larsen M, Lund O, Villa L, et al. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother. 2014;58:3895–903.
Article PubMed PubMed Central Google Scholar
Tian D, Wang M, Zhou Y, Hu D, Ou HY, Jiang X. Genetic diversity and evolution of the virulence plasmids encoding aerobactin and salmochelin in Klebsiella pneumoniae. Virulence. 2021;12:1323–33.
Article PubMed PubMed Central CAS Google Scholar
Robertson J, Nash JHE. MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies. Microb Genom. 2018;4.
Evans D, Sundermann A, Griffith M, Rangachar Srinivasa V, Mustapha M, Chen J, et al. Empirically derived sequence similarity thresholds to study the genomic epidemiology of plasmids shared among healthcare-associated bacterial pathogens. EBioMedicine. 2023;93:104681.
Article PubMed PubMed Central CAS Google Scholar
Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen CY, et al. Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res. 2023;51:W484–92.
Article PubMed PubMed Central CAS Google Scholar
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312–3.
Article PubMed PubMed Central CAS Google Scholar
Partridge SR, Kwong SM, Firth N, Jensen SO. Mobile Genetic Elements Associated with Antimicrobial Resistance. Clin Microbiol Rev. 2018;31.
Tato M, Coque TM, Baquero F, Canton R. Dispersal of carbapenemase blaVIM-1 gene associated with different Tn402 variants, mercury transposons, and conjugative plasmids in Enterobacteriaceae and Pseudomonas aeruginosa. Antimicrob Agents Chemother. 2010;54:320–7.
Article PubMed CAS Google Scholar
Cuzon G, Naas T, Nordmann P. Functional characterization of Tn4401, a Tn3-based transposon involved in blaKPC gene mobilization. Antimicrob Agents Chemother. 2011;55:5370–3.
Article PubMed PubMed Central CAS Google Scholar
Bryant KA, Van Schooneveld TC, Thapa I, Bastola D, Williams LO, Safranek TJ, et al. KPC-4 is encoded within a truncated Tn4401 in an IncL/M plasmid, pNE1280, isolated from Enterobacter cloacae and Serratia marcescens. Antimicrob Agents Chemother. 2013;57:37–41.
Article PubMed PubMed Central CAS Google Scholar
Yu L, Wang D, Li P, Cai Y, Zhang X, Luo X, et al. Epidemiology, molecular characterization, and drug resistance of IncHI5 plasmids from Enterobacteriaceae. Int Microbiol. 2023;26:371–8.
Article PubMed CAS Google Scholar
Liang Q, Jiang X, Hu L, Yin Z, Gao B, Zhao Y, et al. Sequencing and Genomic Diversity Analysis of IncHI5 plasmids. Front Microbiol. 2018;9:3318.
Yuan PB, Dai LT, Zhang QK, Zhong YX, Liu WT, Yang L, Chen DQ. Global emergence of double and multi-carbapenemase producing organisms: epidemiology, clinical significance, and evolutionary benefits on antimicrobial resistance and virulence. Microbiol Spectr. 2024;12:e0000824.
Lasarte-Monterrubio C, Guijarro-Sanchez P, Vazquez-Ucha JC, Alonso-Garcia I, Alvarez-Fraga L, Outeda M, et al. Antimicrobial activity of Cefiderocol against the carbapenemase-producing Enterobacter cloacae complex and characterization of reduced susceptibility Associated with Metallo-beta-lactamase VIM-1. Antimicrob Agents Chemother. 2023;67:e0150522.
Porres-Osante N, Azcona-Gutierrez JM, Rojo-Bezares B, Undabeitia E, Torres C, Saenz Y. Emergence of a multiresistant KPC-3 and VIM-1 carbapenemase-producing Escherichia coli strain in Spain. J Antimicrob Chemother. 2014;69:1792–5.
Article PubMed CAS Google Scholar
Perilli M, Bottoni C, Grimaldi A, Segatore B, Celenza G, Mariani M, et al. Carbapenem-resistant Klebsiella pneumoniae harbouring blaKPC-3 and blaVIM-2 from central Italy. Diagn Microbiol Infect Dis. 2013;75:218–21.
Article PubMed CAS Google Scholar
Castanheira M, Deshpande LM, Mills JC, Jones RN, Soave R, Jenkins SG, Schuetz AN. Klebsiella pneumoniae isolate from a New York City Hospital Belonging to sequence type 258 and carrying blaKPC-2 and blaVIM-4. Antimicrob Agents Chemother. 2016;60:1924–7.
Article PubMed PubMed Central CAS Google Scholar
Decraene V, Phan HTT, George R, Wyllie DH, Akinremi O, Aiken Z et al. A large, refractory nosocomial outbreak of Klebsiella pneumoniae carbapenemase-producing Escherichia coli demonstrates Carbapenemase Gene outbreaks Involving Sink sites require novel approaches to infection control. Antimicrob Agents Chemother. 2018;62.
Weingarten RA, Johnson RC, Conlan S, Ramsburg AM, Dekker JP, Lau AF et al. Genomic Analysis of Hospital Plumbing reveals Diverse Reservoir of bacterial plasmids conferring Carbapenem Resistance. mBio. 2018;9.
Poirel L, Jayol A, Bontron S, Villegas MV, Ozdamar M, Turkoglu S, Nordmann P. The mgrB gene as a key target for acquired resistance to colistin in Klebsiella pneumoniae. J Antimicrob Chemother. 2015;70:75–80.
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