Abbasi M, Kafilzadeh F, Sabokbar A, Haddadi A (2022) Biodegradation of phenanthrene polluted soil through native strains in the darkhouvin oil field. Polycycl Aromat Compd 43:5158–5171. https://doi.org/10.1080/10406638.2022.2097272

Article  CAS  Google Scholar 

Adetunji AT, Lewu FB, Mulidzi R, Ncube B (2017) The biological activities of β-glucosidase, phosphatase and urease as soil quality indicators: a review. J Soil Sci Plant Nutr 17:794–807

Article  CAS  Google Scholar 

Agrawal PK, Shrivastava R, Verma J (2019) Bioremediation approaches for degradation and detoxification of polycyclic aromatic hydrocarbons. In: Bharagava RN, Chowdhary P (ed) Emerging and eco-friendly approaches for waste management, 1st edn. Springer Nature, Singapore, pp 99–119. https://doi.org/10.1007/978-981-10-8669-4_6

Alegbeleye OO, Opeolu BO, Jackson VA (2017) Polycyclic aromatic hydrocarbons: a critical review of environmental occurrence and bioremediation. Environ Manage 60:758–783. https://doi.org/10.1007/s00267-017-0896-2

Article  PubMed  Google Scholar 

Bhaduri S, Demchick PH (1983) Simple and rapid method for disruption of bacteria for protein studies. Appl Environ Microbiol 46:941–943. https://doi.org/10.1128/aem.46.4.941-943.1983

Article  CAS  PubMed  PubMed Central  Google Scholar 

Biswas L, Biswas R, Nerz C, Ohlsen K, Schlag M, Schäfer T, Götz F (2009) Role of the twin-arginine translocation pathway in Staphylococcus. J Bacteriol 191:5921–5929. https://doi.org/10.1128/jb.00642-09

Article  CAS  PubMed  PubMed Central  Google Scholar 

Blagodatsky S, A, Heinemeyer O, Richter J, (2000) Estimating the active and total soil microbial biomass by kinetic respiration analysis. Biol Fertil Soils 32:73–81. https://doi.org/10.1007/s003740000219

Article  CAS  Google Scholar 

Blanco-Enríquez EG, Zavala-Díaz de la Serna FJ, Peralta-Pérez MDR, Ballinas-Casarrubias L, Salmerón I, Rubio-Arias H, Rocha-Gutiérrez BA (2018) Characterization of a microbial consortium for the bio removal of polycyclic aromatic hydrocarbons (PAHs) in water. Int J Environ Res Public Health 15:975. https://doi.org/10.3390/ijerph15050975

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254. https://doi.org/10.1016/0003-2697(76)90527-3

Article  CAS  PubMed  Google Scholar 

Cao B, Geng A, Loh KC (2008) Induction of ortho-and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes. Appl Microbiol Biotechnol 81:99–107. https://doi.org/10.1007/s00253-008-1728-3

Article  CAS  PubMed  Google Scholar 

Cao J, Lai Q, Yuan J, Shao Z (2015) Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T. Sci Rep 5:7741. https://doi.org/10.1038/srep07741

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chakravarty P, Chowdhury D, Deka H (2022) Ecological risk assessment of priority PAHs pollutants in crude oil contaminated soil and its impacts on soil biological properties. J Hazard Mater 437:129325. https://doi.org/10.1016/j.jhazmat.2022.129325

Article  CAS  PubMed  Google Scholar 

Chaudhary P, Singh SB, Chaudhry S, Nain L (2012) Impact of PAH on biological health parameters of soils of an Indian refinery and adjoining agricultural area–a case study. Environ Monit Assess 184:1145–1156. https://doi.org/10.1007/s10661-011-2029-3

Article  CAS  PubMed  Google Scholar 

Eivazi F, Tabatabai MA (1988) Glucosidases and galactosidases in soils. Soil Biol Biochem 20:601–606. https://doi.org/10.1016/0038-0717(88)90141-1

Article  CAS  Google Scholar 

Gaur N, Narasimhulu K, PydiSetty Y (2018) Recent advances in the bio-remediation of persistent organic pollutants and its effect on environment. J Clean Prod 198:1602–1631. https://doi.org/10.1016/j.jclepro.2018.07.076

Article  CAS  Google Scholar 

Ghosal D, Ghosh S, Dutta TK, Ahn Y (2016) Current state of knowledge in microbial degradation of polycyclic aromatic hydrocarbons (PAHs): a review. Front Microbiol. https://doi.org/10.3389/fmicb.2016.01369

Article  PubMed  PubMed Central  Google Scholar 

Gordon L, Dobson AD (2001) Fluoranthene degradation in Pseudomonas alcaligenes PA-10. Biodegradation 12:393–400. https://doi.org/10.1023/A:1015029519142

Article  CAS  PubMed  Google Scholar 

Haritash AK, Kaushik CP (2009) Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. J Hazard Mater 169:1–15. https://doi.org/10.1016/j.jhazmat.2009.03.13

Article  CAS  PubMed  Google Scholar 

He C, Li Y, Huang C, Chen F, Ma Y (2018) Genome sequence and metabolic analysis of a fluoranthene-degrading strain Pseudomonas aeruginosa DN1. Front Microbiol 9:2595. https://doi.org/10.3389/fmicb.2018.02595

Article  PubMed  PubMed Central  Google Scholar 

Heitkamp M, A, Franklin W, Cerniglia CE, (1988) Microbial metabolism of polycyclic aromatic hydrocarbons: isolation and characterization of a pyrene-degrading bacterium. Appl Environ Microbiol 54:2549–2555. https://doi.org/10.1128/aem.54.10.2549-2555.1988

Article  CAS  PubMed  PubMed Central  Google Scholar 

Imam A, Suman SK, Singh P, Vempatapu BP, Tripathi D, Ray A, Kanaujia PK (2023) Proteomic response of Pseudomonas aeruginosa IIPIS-8 during rapid and efficient degradation of naphthalene. Environ Res 216:114511. https://doi.org/10.1016/j.envres.2022.114511

Article  CAS  PubMed  Google Scholar 

Jindal S, Aggarwal KK (2023) Assessment of phenanthrene-degrading potential of Klebsiella pneumoniae SJK1 isolated from an oil-contaminated site. Microbiology 92:572–586. https://doi.org/10.1134/S0026261722602585

Article  CAS  Google Scholar 

Kadri T, Rouissi T, Brar SK, Cledon M, Sarma S, Verma M (2017) Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by fungal enzymes: a review. J Environ Sci 51:52–74. https://doi.org/10.1016/j.jes.2016.08.023

Article  CAS  Google Scholar 

Kafilzadeh F, Khosrobak A, Jamali H (2016) Isolation and identification of phenanthrene degrading bacteria from the soil around oil company of Andimeshk and investigation of their growth kinetics. Polycycl Aromat Compd 36:58–71. https://doi.org/10.1080/10406638.2015.1037006

Article  CAS  Google Scholar 

Kanehisa M (2000) Post-genome informatics. OUP, Oxford

Book  Google Scholar 

Kennedy AC, Stubbs TL (2006) Soil microbial communities as indicators of soil health. Ann. Arid Zone 45:287–308

Google Scholar 

Keum YS, Seo JS, Li QX, Kim JH (2008) Comparative metabolomic analysis of Sinorhizobium sp. C4 during the degradation of phenanthrene. Appl Microbiol Biotechnol 80:863–872. https://doi.org/10.1007/s00253-008-1581-4

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kiamarsi Z, Soleimani M, Nezami A, Kafi M (2019) Biodegradation of n-alkanes and polycyclic aromatic hydrocarbons using novel indigenous bacteria isolated from contaminated soils. Int J Environ Sci Technol 16:6805–6816. https://doi.org/10.1007/s13762-018-2087-y

Article  CAS  Google Scholar 

Kim Y, Choi B, Lee J, Chang H, Min KR (1992) Characterization of catechol 2 3-dioxygenases. Biochem Biophys Res Commun 183:77–82

Article  CAS  PubMed  Google Scholar 

Kim D, Kim YS, Kim SK, Kim SW, Zylstra GJ, Kim YM, Kim E (2002) Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp, strain DK17. Appl Environ Microbiol 68:3270–3278. https://doi.org/10.1128/AEM.68.7.3270-3278.2002

Article  CAS  PubMed  PubMed Central