Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
Article CAS PubMed Google Scholar
Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro E, Duvaud S, Flegel V, Fortier A, Gasteiger E, Grosdidier A, Hernandez C, Ioannidis V, Kuznetsov D, Liechti R, Moretti S, Mostaguir K, Redaschi N, Rossier G, Xenarios I, Stockinger H (2012) Expasy: Sib bioinformatics resource portal. Nucleic Acids Res 40:W597–W603
Article CAS PubMed PubMed Central Google Scholar
Bailey T, Bodén M, Buske F, Frith M, Grant C, Clementi L, Ren J, Li W, Noble W (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37:W202–W208
Article CAS PubMed PubMed Central Google Scholar
Bao F, Ding AQ, Cheng TR, Wang J, Zhang QX (2019) Genome-wide analysis of members of the WRKY gene family and their cold stress response in Prunus mume. Genes 10:911
Article CAS PubMed PubMed Central Google Scholar
Budak H, Kantar M, Kurtoglu KY (2013) Drought Tolerance in Modern and Wild Wheat. Sci World J 2013: 548246
Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R (2020a) TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant 13:1194–1202
Article CAS PubMed Google Scholar
Chen C, Chen X, Han J, Lu W, Ren Z (2020b) Genome-wide analysis of the WRKY gene family in the cucumber genome and transcriptome-wide identification of WRKY transcription factors that respond to biotic and abiotic stresses. BMC Plant Biol 20:443
Article CAS PubMed PubMed Central Google Scholar
Chen MH, Yan TX, Shen Q, Lu X, Pan QF, Huang YR, Tang YL, Fu XQ, Liu M, Jiang WM, Lv ZY, Shi P, Ma YN, Hao XL, Zhang LD, Li L, Tang KX (2017) Glandular trichome-specific WRKY 1 promotes artemisinin biosynthesis in Artemisia annua. New Phytol 214:304–316
Article CAS PubMed Google Scholar
Chen XJ, Li C, Wang H, Guo ZJ (2019) WRKY transcription factors: evolution, binding, and action. Phytopathol Res 1:13
Cheng MN, Huang ZJ, Hua QZ, Shan W, Kuang JF, Lu WJ, Qin YH, Chen JY (2017) The WRKY transcription factor HpWRKY44 regulates CytP450-like1 expression in red pitaya fruit (Hylocereus polyrhizus). Hortic Res 4:17039
Article PubMed PubMed Central Google Scholar
Cheng XK, Zhao YX, Jiang QS, Yang J, Zhao WS, Taylor IA, Peng YL, Wang DL, Liu JF (2019) Structural basis of dimerization and dual w-box DNA recognition by rice WRKY domain. Nucleic Acids Res 47:4308–4318
Article CAS PubMed PubMed Central Google Scholar
Chou KC, Shen HB (2010) Plant-mPploc: a top-down strategy to augment the power for predicting plant protein subcellular localization. PLoS ONE 5:e11335
Article PubMed PubMed Central Google Scholar
Eulgem T, Rushton PJ, Robatzek S, Somssich IE (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci 5:199–206
Article CAS PubMed Google Scholar
Fan SJ, Dong LD, Han D, Zhang F, Wu JJ, Jiang LY, Cheng Q, Li RP, Lu WC, Meng FS, Zhang SZ, Xu PF (2017) GmWRKY31 and GmHDL56 enhances resistance to Phytophthora sojae by regulating defense-related gene expression in soybean. Front Plant Sci 8:781
Fang X, Li W, Yuan H, Chen H, Bo C, Ma Q, Cai R (2021) Mutation of ZmWRKY86 confers enhanced salt stress tolerance in maize. Plant Physiol Biochem 167:840–850
Article CAS PubMed Google Scholar
Fei J, Wang YS, Cheng H, Su YB, Zhong YJ, Zheng L (2022) The Kandelia obovata transcription factor KoWRKY40 enhances cold tolerance in transgenic Arabidopsis. BMC Plant Biol 22:274
Article CAS PubMed PubMed Central Google Scholar
Findling S, Fekete A, Warzecha H, Krischke M, Brandt H, Blume E, Mueller MJ, Berger S (2014) Manipulation of methyl jasmonate esterase activity renders tomato more susceptible to Sclerotinia sclerotiorum. Funct Plant Biol 41:133–143
Article CAS PubMed Google Scholar
Franklin KA (2009) Light and temperature signal crosstalk in plant development. Curr Opin Plant Biol 12:63–68
Article CAS PubMed Google Scholar
Geourjon C, Deleage G (1995) SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput Appl Biosci 11:681–684
Halim VA, Vess A, Scheel D, Rosahl S (2006) The role of salicylic acid and jasmonic acid in pathogen defence. Plant Biol 8:307–313
Article CAS PubMed Google Scholar
He GH, Xu JY, Wang YX, Liu JM, Li PS, Chen M, Ma YZ, Xu ZS (2016) Drought-responsive WRKY transcription factor genes TaWRKY1 and TaWRKY33 from wheat confer drought and/or heat resistance in Arabidopsis. BMC Plant Biol 16:116
Article PubMed PubMed Central Google Scholar
Hu K, Guan WJ, Bi Y, Zhang W, Li LJ, Zhang BL, Liu QQ, Song YL, Li XW, Duan ZP, Zheng QS, Yang ZF, Liang JY, Han MF, Ruan LG, Wu CM, Zhang YT, Jia ZH, Zhong NS (2021) Efficacy and safety of lianhuaqingwen capsules, a repurposed chinese herb, in patients with coronavirus disease 2019: a multicenter, prospective, randomized controlled trial. Phytomedicine 85:153242
Article CAS PubMed Google Scholar
Huang S, Gao Y, Liu J, Peng X, Niu X, Fei Z, Cao S, Liu Y (2012) Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. Mol Genet Genomics 287:495–513
Article CAS PubMed Google Scholar
Huang XB, Cao LW, Fan JB, Ma GJ, Chen L (2022) CdWRKY2-mediated sucrose biosynthesis and CBF-signalling pathways coordinately contribute to cold tolerance in bermudagrass. Plant Biotechnol J 20:660–675
Article CAS PubMed Google Scholar
Hwang SH, Kwon SI, Jang JY, Fang IL, Lee H, Choi C, Park S, Ahn I, Bae SC, Hwang DJ (2016) OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. Oryzae. Plant Cell Rep 35:1975–1985
Article CAS PubMed Google Scholar
Ishiguro S, Nakamura K (1994) Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5′ upstream regions of genes coding for sporamin and beta-amylase from sweet potato. Mol Gen Genet 244:563–571
Article CAS PubMed Google Scholar
Jiang JJ, Ma SH, Ye NH, Jiang M, Cao JS, Zhang JH (2017) WRKY transcription factors in plant responses to stresses. J Integr Plant Biol 59:86–101
Article CAS PubMed Google Scholar
Jones D, Taylor W, Thornton J (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275–282
Karanja BK, Fan LX, Xu L, Wang Y, Zhu XW, Tang MJ, Wang RH, Zhang F, Muleke EM, Liu LW (2017) Genome-wide characterization of the WRKY gene family in radish (Raphanus sativus L.) reveals its critical functions under different abiotic stresses. Plant Cell Rep 36:1757–1773
Article CAS PubMed Google Scholar
Kim CY, Vo KTX, Nguyen CD, Jeong DH, Lee SK, Kumar M, Kim SR, Park SH, Kim JK, Jeon JS (2016) Functional analysis of a cold-responsive rice WRKY gene, OsWRKY71. Plant Biotechnol Rep 10:13–23
Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874
Article CAS PubMed PubMed Central Google Scholar
Li P, Zheng TC, Li LL, Wang J, Cheng TR, Zhang QX (2022b) Genome-wide investigation of the bZip transcription factor gene family in Prunus mume: classification, evolution, expression profile and low-temperature stress responses. Hortic Plant J 8:230–242
Li Y, Li X, Wei JT, Cai KW, Zhang HZ, Ge LL, Ren ZJ, Zhao CL, Zhao XY (2021a) Genome-wide identification and analysis of the WRKY gene family and cold stress response in Acer truncatum. Genes 12:1867
Article CAS PubMed PubMed Central Google Scholar
Li Y, Shi LC, Cushman SA (2021c) Transcriptomic responses and physiological changes to cold stress among natural populations provide insights into local adaptation of weeping forsythia. Plant Physiol Biochem 165:94–103
Article CAS PubMed Google Scholar
Li Y, Shi LC, Pei NC, Cushman SA, Si YT (2021b) Transcriptomic responses to drought stress among natural populations provide insights into local adaptation of weeping forsythia. BMC Plant Biol 21:273
Article CAS PubMed PubMed Central Google Scholar
Li Y, Wang F, Pei NC, Li Q, Liu HL, Yuan WJ, Zhang HC (2022a) The updated weeping forsythia genome reveals the genomic basis for the evolution and the forsythin and forsythoside a biosynthesis. Hortic Plant J. https://doi.org/10.1016/j.hpj.2022
Ning P, Liu CC, Kang JQ, Lv JY (2017) Genome-wide analysis of WRKY transcription factors in wheat (Triticum aestivum L.) and differential expression under water deficit condition. PeerJ 55:e3232
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