Modeling impairment of ionic regulation with extended Adaptive Exponential integrate-and-fire models

Alexandersen, C. G., Duprat, C., Ezzati, A., Houzelstein, P., Ledoux, A., Liu, Y., Saghir, S., Destexhe, A., Tesler, F., & Depannemaecker, D. (2024). A mean field to capture asynchronous irregular dynamics of conductance-based networks of adaptive quadratic integrate-and-fire neuron models. Neural Computation, 36(7), 1433–1448.

Article  PubMed  Google Scholar 

Bandyopadhyay, A., Rabuffo, G., Calabrese, C., Gudibanda, K., Depannemaecker, D., Ivanov, A., Bernard, C., Jirsa, V. K., & Petkoski, S. (2021). Mean-field approximation of network of biophysical neurons driven by conductance-based ion exchange. bioRxiv, 2021–2010.

Bazhenov, M., Timofeev, I., Steriade, M., & Sejnowski, T. J. (2004). Potassium model for slow (2–3 hz) in vivo neocortical paroxysmal oscillations. Journal of Neurophysiology, 92(2), 1116–1132.

Article  CAS  PubMed  Google Scholar 

Bikson, M., Hahn, P. J., Fox, J. E., & Jefferys, J. G. R. (2003). Depolarization block of neurons during maintenance of electrographic seizures. Journal of Neurophysiology, 90(4), 2402–2408.

Article  PubMed  Google Scholar 

Bragin, A., Penttonen, M., & Buzsáki, G. (1997). Termination of epileptic afterdischarge in the hippocampus. The Journal of Neuroscience, 17(7), 2567–2579.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Brette, R., & Gerstner, W. (2005). Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. Journal of Neurophysiology, 94(5), 3637–3642.

Article  PubMed  Google Scholar 

Carlu, M., Chehab, O., Porta, L. D., Depannemaecker, D., Héricé, C., Jedynak, M., Ersöz, E. K., Muratore, P., Souihel, S., Capone, C., Zerlaut, Y., Destexhe, A., & di Volo, M. (2020). A mean-field approach to the dynamics of networks of complex neurons, from nonlinear integrate-and-fire to hodgkin-huxley models. Journal of Neurophysiology, 123(3), 1042–1051.

Article  CAS  PubMed  Google Scholar 

Chizhov, A. V., Zefirov, A. V., Amakhin, D. V., Smirnova, E. Y., & Zaitsev, A. V. (2018). Minimal model of interictal and ictal discharges “epileptor-2’’. PLoS Computational Biology, 14(5), e1006186.

Article  PubMed  PubMed Central  Google Scholar 

Cressman, J. R., Ullah, G., Ziburkus, J., Schiff, S. J., & Barreto, E. (2009). The influence of sodium and potassium dynamics on excitability, seizures, and the stability of persistent states: I. single neuron dynamics. Journal of Computational Neuroscience, 26(2), 159–170.

Article  PubMed  PubMed Central  Google Scholar 

Depannemaecker, D., Ivanov, A., Lillo, D., Spek, L., Bernard, C., & Jirsa, V. (2022b). A unified physiological framework of transitions between seizures, sustained ictal activity and depolarization block at the single neuron level. Journal of Computational Neuroscience, 1–17.

Depannemaecker, D., Carlu, M., Bouté, J., & Destexhe, A. (2022a). A model for the propagation of seizure activity in normal brain tissue. Eneuro, 9(6), ENEURO.0234-21.2022.

Article  PubMed  Google Scholar 

Depannemaecker, D., Ezzati, A., Wang, H. E., Jirsa, V., & Bernard, C. (2023). From phenomenological to biophysical models of seizures. Neurobiology of Disease, 182, 106131.

Article  CAS  PubMed  Google Scholar 

Desroches, M., Kowalczyk, P., & Rodrigues, S. (2024). Discontinuity-induced dynamics in the conductance-based adaptive exponential integrate-and-fire model. HAL e-print 04665937. https://inria.hal.science/hal-04665937

Desroches, M., Kowalczyk, P., & Rodrigues, S. (2021). Spike-adding and reset-induced canard cycles in adaptive integrate and fire models. Nonlinear Dynamics, 104(3), 2451–2470.

Górski, T., Depannemaecker, D., & Destexhe, A. (2021). Conductance-based adaptive exponential integrate-and-fire model. Neural Computation, 33(1), 41–66.

Hashemi, M., Depannemaecker, D., Saggio, M., Triebkorn, P., Rabuffo, G., Fousek, J., Ziaeemehr, A., Sip, V., Athanasiadis, A., Breyton, M., Woodman, M., Wang, H., Petkoski, S., Sorrentino, P., & Jirsa, V. (2024). Principles and operation of virtual brain twins.

Hodgkin, A. L., & Huxley, A. F. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of Physiology, 117(4), 500–544.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Izhikevich, E. M. (2006). Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting. The MIT Press.

Jirsa, V. K., Stacey, W. C., Quilichini, P. P., Ivanov, A. I., & Bernard, C. (2014). On the nature of seizure dynamics. Brain: A Journal of Neurology, 137(Pt 8), 2210–2230.

Article  PubMed  Google Scholar 

Naud, R., Marcille, N., Clopath, C., & Gerstner, W. (2008). Firing patterns in the adaptive exponential integrate-and-fire model. Biological Cybernetics, 99(4–5), 335.

Article  PubMed  PubMed Central  Google Scholar 

Rodrigues, A. M., Santos, L. E. C., Covolan, L., Hamani, C., & Almeida, A.-C. G. (2015). pH during non-synaptic epileptiform activity–computational simulations. Physical Biology, 12(5), 056007.

Article  PubMed  Google Scholar 

Santhakumar, V., Aradi, I., & Soltesz, I. (2005). Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: A network model of the dentate gyrus incorporating cell types and axonal topography. Journal of Neurophysiology, 93(1), 437–453.

Article  PubMed  Google Scholar 

Stenroos, P., Guillemain, I., Tesler, F., Montigon, O., Collomb, N., Stupar, V., Destexhe, A., Coizet, V., David, O., & Barbier, E. L. (2024). Eeg-fmri in awake rat and whole-brain simulations show decreased brain responsiveness to sensory stimulations during absence seizures. eLife, 12, RP90318.

Article  PubMed  PubMed Central  Google Scholar 

Tejada, J., Garcia-Cairasco, N., & Roque, A. C. (2014). Combined role of seizure-induced dendritic morphology alterations and spine loss in newborn granule cells with mossy fiber sprouting on the hyperexcitability of a computer model of the dentate gyrus. PLoS Computational Biology, 10(5), e1003601.

Article  PubMed  PubMed Central  Google Scholar 

Wang, H. E., Triebkorn, P., Breyton, M., Dollomaja, B., Lemarechal, J.-D., Petkoski, S., Sorrentino, P., Depannemaecker, D., Hashemi, M., & Jirsa, V. K. (2024). Virtual brain twins: From basic neuroscience to clinical use. National Science Review, 11(5).

Wei, Y., Ullah, G., & Schiff, S. J. (2014). Unification of neuronal spikes, seizures, and spreading depression. The Journal of Neuroscience, 34(35), 11733–11743.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wenzel, M., Hamm, J. P., Peterka, D. S., & Yuste, R. (2019). Acute focal seizures start as local synchronizations of neuronal ensembles. The Journal of Neuroscience, 39(43), 8562–8575.

Article  CAS  PubMed  PubMed Central  Google Scholar 

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