Abraham A-L, Rocha EPC and Pothier J 2008 Swelfe: a detector of internal repeats in sequences and structures. Bioinformatics 24 1536–1537

Article  CAS  PubMed  PubMed Central  Google Scholar 

Altschul SF, Gish W, Miller W, et al. 1990 Basic local alignment search tool. J. Mol. Biol. 215 403–410

Article  CAS  PubMed  Google Scholar 

Babu V, Uthayakumar M, Kirti Vaishnavi M, et al. 2011 RPS: Repeats in protein sequences. J. Appl. Crystallogr. 44 647–650

Article  ADS  CAS  Google Scholar 

Gruber M, Söding J and Lupas AN 2005 REPPER—repeats and their periodicities in fibrous proteins. Nucleic Acids Res. 33 W239–W243

Article  CAS  PubMed  PubMed Central  Google Scholar 

Heger A and Holm L 2000 Rapid automatic detection and alignment of repeats in protein sequences. Proteins 41 224–237

Article  CAS  PubMed  Google Scholar 

Karp R and Rabin MO 1987 Efficient randomized pattern-matching algorithms. IBM J. Res. Dev. 31 249–260

Article  MathSciNet  Google Scholar 

Klein C and Westenberger A 2012 Genetics of Parkinson’s disease. Cold Spring Harb. Perspect. Med. 2 a008888

Article  PubMed  PubMed Central  Google Scholar 

Kohany O, Gentles AJ, Hankus L, et al. 2006 Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinform. 7 474

Article  Google Scholar 

Luo H and Nijveen H 2014 Understanding and identifying amino acid repeats. Brief. Bioinform. 15 582–591

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mansour A 2008 ClustalW©: Widespread Multiple sequences alignments program. J. Cell Mol. 7 81–82

Google Scholar 

Marcotte EM, Pellegrini M, Yeates TO, et al. 1999 A census of protein repeats. J. Mol. Biol. 293 151–160

Article  CAS  PubMed  Google Scholar 

Meena LS 2015 An overview to understand the role of PE _ PGRS family proteins in Mycobacterium tuberculosis H 37 R v and their potential as new drug targets. Biotechnol. Appl. Biochem. 62 145–153

Article  CAS  PubMed  Google Scholar 

Michael D, Gurusaran M, Santhosh R, et al. 2019 RepEx: A web server to extract sequence repeats from protein and DNA sequences. Comput. Biol. Chem. 78 424–430

Article  CAS  PubMed  Google Scholar 

Nirjhar B, Chidambarathanu N, Daliah M, et al. 2008 An Algorithm to find all identical internal sequence repeats. Curr. Sci. 95 188–195

Google Scholar 

Rajathei DM, Parthasarathy S and Selvaraj S 2019 Identification and analysis of long repeats of proteins at the domain level. Front. Bioeng. Biotechnol. 7 250

Article  PubMed  PubMed Central  Google Scholar 

Senthilkumar R, Sabarinathan R, Hameed BS, et al. 2010 FAIR: a server for internal sequence repeats. Bioinformation 4 271–275

Article  PubMed  PubMed Central  Google Scholar 

Szklarczyk R and Heringa J 2004 Tracking repeats using significance and transitivity. Bioinformatics 20 (Suppl 1) i311–i317

Article  CAS  PubMed  Google Scholar 

Tanabe K, Arisue N, Palacpac NM, et al. 2012 Geographic differentiation of polymorphism in the Plasmodium falciparum malaria vaccine candidate gene SERA5. Vaccine 30 1583–1593

Article  CAS  PubMed  Google Scholar 

Thompson JD, Higgins DG and Gibson TJ 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 4673–4680

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ukkonen E 1995 On-line construction of suffix trees. Algorithmica 14 249–260

Article  MathSciNet  Google Scholar 

Uthayakumar M, Benazir B, Patra S, et al. 2012 Homepeptide repeats: implications for protein structure, function and evolution. Genom. Proteom. Bioinform. 10 217–225

Article  CAS  Google Scholar 

Vetting MW, Hegde SS, Fajardo JE, et al. 2006 Pentapeptide repeat proteins. Biochemistry 45 1–10

Article  CAS  PubMed  Google Scholar 

Worsfold P, Townshend A, Poole CF, et al. 2019 Encyclopedia of analytical science, 3rd edition (Elsevier)