Afzal I, Shinwari ZK, Sikandar S, Shahzad S (2019) Plant beneficial endophytic bacteria: mechanisms, diversity, host range and genetic determinants. Microbiol Res 221:36–49. https://doi.org/10.1016/j.micres.2019.02.001
Article CAS PubMed Google Scholar
Akinsanya MA, Goh JK, Lim SP, Ting ASY (2015) Diversity, antimicrobial and antioxidant activities of culturable bacterial endophyte communities in Aloe vera. FEMS Microbiol Lett 362:fnv184 https://doi.org/10.1093/femsle/fnv184
Alreedy RM (2022) Influence of irrigation water on the diversity and distribution of the endophytic bacterial microbiome associated with Mentha longifolia metagenomics profiling. Egypt J Bot 62:493–505. https://doi.org/10.21608/ejbo.2022.102867.1821
Andreozzi A, Prieto P, Mercado-Blanco J, Monaco S, Zampieri E, Romano S, Valè G, Defez R, Bianco C (2019) Efficient colonization of the endophytes Herbaspirillum huttiense RCA24 and Enterobacter cloacae RCA25 influences the physiological parameters of Oryza sativa L. cv. Baldo Rice Environ Microbiol 21:3489–3504. https://doi.org/10.1111/1462-2920.14688
Article CAS PubMed Google Scholar
Aranda S, Montes-Borrego M, Landa BB (2011) Purple-pigmented violacein-producing Duganella spp. inhabit the rhizosphere of wild and cultivated olives in southern Spain. Microb Ecol 62:446–459. https://doi.org/10.1007/s00248-011-9840-9
Article ADS CAS PubMed Google Scholar
Bin C, Fangming Y, Zhi J (2020) Mogroside V-producing endophytic fungi isolated from Siraitia grosvenorii. Planta Med 86:983–987. https://doi.org/10.1055/a-1102-1168
Article CAS PubMed Google Scholar
Bloch K (1992) Sterol molecule: structure, biosynthesis, and function. Steroids 57:378–383. https://doi.org/10.1016/0039-128x(92)90081-j
Article CAS PubMed Google Scholar
Bodenhausen N, Horton MW, Bergelson J (2013) Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS ONE 8:e56329. https://doi.org/10.1371/journal.pone.0056329
Article ADS CAS PubMed PubMed Central Google Scholar
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37:852–857. https://doi.org/10.1038/s41587-019-0209-9
Article CAS PubMed PubMed Central Google Scholar
Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP (2016) DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods 13:581–583. https://doi.org/10.1038/nmeth.3869
Article CAS PubMed PubMed Central Google Scholar
Campisano A, Antonielli L, Pancher M, Yousaf S, Pindo M, Pertot I (2014) Bacterial endophytic communities in the grapevine depend on pest management. PLoS ONE 9:e112763. https://doi.org/10.1371/journal.pone.0112763
Article ADS CAS PubMed PubMed Central Google Scholar
Chen H, Wu H, Yan B, Zhao H, Liu F, Zhang H, Sheng Q, Miao F, Liang Z (2018) Core microbiome of medicinal plant Salvia miltiorrhiza seed: a rich reservoir of beneficial microbes for secondary metabolism? Int J Mol Sci 19:672. https://doi.org/10.3390/ijms19030672
Article CAS PubMed PubMed Central Google Scholar
Chhabra S, Dowling DN (2017) Endophyte-promoted nutrient acquisition: phosphorus and iron. In: Doty S. (eds) Functional importance of the plant microbiome. Springer, Cham 21–42. https://doi.org/10.1007/978-3-319-65897-1_3
Chiu C-H, Wang R, Zhuang S, Lin P-Y, Lo Y-C, Lu T-J (2020) Biotransformation of mogrosides from Siraitia grosvenorii by Ganoderma lucidum mycelium and the purification of mogroside III E by macroporous resins. J Food Drug Anal 28:74–83. https://doi.org/10.1016/j.jfda.2019.05.001
Article CAS PubMed Google Scholar
Chong J, Liu P, Zhou G, Xia J (2020) Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data. Nat Protoc 15:799–821. https://doi.org/10.1038/s41596-019-0264-1
Article CAS PubMed Google Scholar
Da Silva TF, Vollú RE, Marques JM, Salles JF, Seldin L (2017) The bacterial community associated with rose-scented geranium (Pelargonium graveolens) leaves responds to anthracnose symptoms. Plant Soil 414:69–79. https://doi.org/10.1007/s11104-016-3102-z
Dai JX, Liu XM, Wang YJ (2014) Diversity of endophytic bacteria in Caragana microphylla grown in the desert grassland of the Ningxia Hui autonomous region of China. Genet Mol Res 13:2349–2358. https://doi.org/10.4238/2014.April.3.7
Article CAS PubMed Google Scholar
Dastogeer KMG, Li H, Sivasithamparam K, Jones MGK, Wylie SJ (2018) Host specificity of endophytic mycobiota of wild Nicotiana plants from arid regions of Northern Australia. Microb Ecol 75:74–87. https://doi.org/10.1007/s00248-017-1020-0
Article ADS PubMed Google Scholar
de Souza RSC, Okura VK, Armanhi JSL, Jorrín B, Lozano N, Da Silva MJ, González-Guerrero M, de Araújo LM, Verza NC, Bagheri HC (2016) Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome. Sci Rep 6:1–15. https://doi.org/10.1038/srep28774
Deng Z-S, Zhao L-F, Xu L, Kong Z-Y, Zhao P, Qin W, Chang J-L, Wei G-H (2011) Paracoccus sphaerophysae sp. nov., a siderophore-producing, endophytic bacterium isolated from root nodules of Sphaerophysa salsula. Int J Syst Evol Microbiol 61:665–669. https://doi.org/10.1099/ijs.0.021071-0
Article CAS PubMed Google Scholar
Dong C, Shao Q, Zhang Q, Yao T, Huang J, Liang Z, Han Y (2021) Preferences for core microbiome composition and function by different definition methods: evidence for the core microbiome of Eucommia ulmoides bark. Sci Total Environ 790:148091. https://doi.org/10.1016/j.scitotenv.2021.148091
Article ADS CAS PubMed Google Scholar
Dong C-J, Wang L-L, Li Q, Shang Q-M (2019) Bacterial communities in the rhizosphere, phyllosphere and endosphere of tomato plants. PLoS ONE 14:e0223847. https://doi.org/10.1371/journal.pone.0223847
Article CAS PubMed PubMed Central Google Scholar
Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI (2020) PICRUSt2 for prediction of metagenome functions. Nat Biotechnol 38:685–688. https://doi.org/10.1038/s41587-020-0548-6
Article CAS PubMed PubMed Central Google Scholar
Elvia JC, de Freitas RJ, Germida JJ (2021) Bacterial microbiomes associated with the rhizosphere, root interior, and aboveground plant organs of wheat and canola at different growth stages. Phytobiomes J 5:442–451. https://doi.org/10.1094/PBIOMES-10-20-0073-R
Eyberger AL, Dondapati R, Porter JR (2006) Endophyte fungal isolates from Podophyllum peltatum produce podophyllotoxin. J Nat Prod 69:1121–1124. https://doi.org/10.1021/np060174f
Article CAS PubMed Google Scholar
Fadiji AE, Babalola OO (2020) Elucidating mechanisms of endophytes used in plant protection and other bioactivities with multifunctional prospects. Front Bioeng Biotechnol 8:467. https://doi.org/10.3389/fbioe.2020.00467
Article PubMed PubMed Central Google Scholar
Fang K, Miao Y-F, Chen L, Zhou J, Yang Z-P, Dong X-F, Zhang H-B (2019) Tissue-specific and geographical variation in endophytic fungi of Ageratina adenophora and fungal associations with the environment. Front Microbiol 10:2919. https://doi.org/10.3389/fmicb.2019.02919
Article PubMed PubMed Central Google Scholar
Friedman J, Alm EJ (2012) Inferring correlation networks from genomic survey data. PLoS Comput Biol 8:e1002687. https://doi.org/10.1371/journal.pcbi.1002687
Article ADS CAS PubMed PubMed Central Google Scholar
Gao J, Xue J, Yan H, Tong S, Khan MS, Wang L, Mao X, Zhang X, Sun J (2019) Pantoea endophytica sp. nov., novel endophytic bacteria isolated from maize planting in different geographic regions of northern China. Syst Appl Microbiol 42:488–494. https://doi.org/10.1016/j.syapm.2019.06.001
Goldstein JL, Brown MS (1990) Regulation of the mevalonate pathway. Nature 343(6257):425–430. https://doi.org/10.1038/343425a0
Article ADS CAS PubMed Google Scholar
Gupta S, Chaturvedi P, Kulkarni MG, Van Staden J (2020) A critical review on exploiting the pharmaceutical potential of plant endophytic fungi. Biotechnol Adv 39:107462. https://doi.org/10.1016/j.biotechadv.2019.107462
Article CAS PubMed Google Scholar
Hamady M, Knight R (2009) Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res 19:1141–1152. https://doi.org/10.1101/gr.085464.108
Article CAS PubMed PubMed Central Google Scholar
Issa A, Esmaeel Q, Sanchez L, Courteaux B, Guise J-F, Gibon Y, Ballias P, Clément C, Jacquard C, Vaillant-Gaveau N (2018) Impacts of Paraburkholderia phytofirmans strain PsJN on tomato (Lycopersicon esculentum L) under high temperature. Front Plant Sci 9:1397 https://doi.org/10.3389/fpls.2018.01397
Itkin M, Davidovich-Rikanati R, Cohen S, Portnoy V, Doron-Faigenboim A, Oren E, Freilich S, Tzuri G, Baranes N, Shen S, Petreikov M, Sertchook R, Ben-Dor S, Gottlieb H, Hernandez A, Nelson DR, Paris HS, Tadmor Y, Burger Y, Lewinsohn E, Katzir N, Schaffer A (2016) The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii. Proc Natl Acad Sci USA 113:E7619–E7628. https://doi.org/10.1073/pnas.1604828113
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