Bressanelli S, Stiasny K, Allison SL, Stura EA, Duquerroy S, Lescar J, Heinz FX, Rey FA (2004) Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation. EMBO J 23:728–738

Article  CAS  PubMed  PubMed Central  Google Scholar 

Carpio LE, Villalaín J (2020) Identification of the phospholipid binding regions of the envelope E protein of flaviviruses by molecular dynamics. J Biomol Struct Dyn 38:5136–5147

Article  CAS  PubMed  Google Scholar 

Cespedes GF, Nobre TM, Oliveira ON Jr, Bong D, Cilli EM (2021) On the role of surrounding regions in the fusion peptide in dengue virus infection. Virology 557:62–69

Article  CAS  PubMed  Google Scholar 

Chakraborty H, Tarafdar PK, Bruno MJ, Sengupta T, Lentz BR (2012) Activation thermodynamics of poly(ethylene glycol)-mediated model membrane fusion support mechanistic models of stalk and pore formation. Biophys J 102:2751–2760

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chakraborty H, Tarafdar PK, Klapper DG, Lentz BR (2013) Wild-type and mutant hemagglutinin fusion peptides alter bilayer structure as well as kinetics and activation thermodynamics of stalk and pore formation differently: mechanistic implications. Biophys J 105:2495–2506

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chakraborty H, Sengupta T, Lentz BR (2014) pH Alters PEG-mediated fusion of phosphatidylethanolamine-containing vesicles. Biophys J 107:1327–1338

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chakraborty H, Lentz BR, Kombrabail M, Krishnamoorthy G, Chattopadhyay A (2017) Depth-dependent membrane ordering by hemagglutinin fusion peptide promotes fusion. J Phys Chem B 121:1640–1648

Article  CAS  PubMed  Google Scholar 

Chao LH, Klein DE, Schmidt AG, Peña JM, Harrison SCJE (2014) Sequential conformational rearrangements in flavivirus membrane fusion. Elife 3:e04389

Article  PubMed  PubMed Central  Google Scholar 

Chen Y, Barkley MD (1998) Toward understanding tryptophan fluorescence in proteins. Biochemistry 37:9976–9982

Article  CAS  PubMed  Google Scholar 

Corver J, Ortiz A, Allison SL, Schalich J, Heinz FX, Wilschut J (2000) Membrane fusion activity of tick-borne encephalitis virus and recombinant subviral particles in a liposomal model system. Virology 269:37–46

Article  CAS  PubMed  Google Scholar 

Cruz-Oliveira C, Freire JM, Conceição TM, Higa LM, Castanho MARB, Da Poian AT (2015) Receptors and routes of dengue virus entry into the host cells. FEMS Microbiol Rev 39:155–170

Article  CAS  PubMed  Google Scholar 

Escribá PV, Busquets X, Inokuchi J-i, Balogh G, Török Z, Horváth I, Harwood JL, Vígh L (2015) Membrane lipid therapy: Modulation of the cell membrane composition and structure as a molecular base for drug discovery and new disease treatment. Prog Lipid Res 59:38–53

Article  PubMed  Google Scholar 

Espósito DL, Nguyen JB, DeWitt DC, Rhoades E, Modis Y (2015) Physico-chemical requirements and kinetics of membrane fusion of flavivirus-like particles. J Gen Virol 96:1702–1711

Article  PubMed  PubMed Central  Google Scholar 

Ge P, Zhou ZH (2014) Chaperone fusion proteins aid entropy-driven maturation of class II viral fusion proteins. Trends Microbiol 22:100–106

Article  CAS  PubMed  Google Scholar 

Gollins SW, Porterfield JS (1986) pH-dependent fusion between the flavivirus West Nile and liposomal model membranes. J Gen Virol 67:157–166

Article  CAS  PubMed  Google Scholar 

Haque ME, Lentz BR (2002) Influence of gp41 fusion peptide on the kinetics of poly(ethylene glycol)-mediated model membrane fusion. Biochemistry 41:10866–10876

Article  CAS  PubMed  Google Scholar 

Haque ME, McCoy AJ, Glenn J, Lee J, Lentz BR (2001) Effects of hemagglutinin fusion peptide on poly(ethylene glycol)-mediated fusion of phosphatidylcholine vesicles. Biochemistry 40:14243–14251

Article  CAS  PubMed  Google Scholar 

Haque ME, Chakraborty H, Koklic T, Komatsu H, Axelsen PH, Lentz BR (2011) Hemagglutinin fusion peptide mutants in model membranes: structural properties, membrane physical properties, and PEG-mediated fusion. Biophys J 101:1095–1104

Article  CAS  PubMed  PubMed Central  Google Scholar 

Huang CY, Butrapet S, Moss KJ, Childers T, Erb SM, Calvert AE, Silengo SJ, Kinney RM, Blair CD, Roehrig JT (2010) The dengue virus type 2 envelope protein fusion peptide is essential for membrane fusion. Virology 396:305–315

Article  CAS  PubMed  Google Scholar 

Hullin-Matsuda F, Taguchi T, Greimel P, Kobayashi T (2014) Lipid compartmentalization in the endosome system. Semin Cell Dev Biol 31:48–56

Article  CAS  PubMed  Google Scholar 

Joardar A, Pattnaik GP, Chakraborty H (2021) Effect of phosphatidylethanolamine and oleic acid on membrane fusion: phosphatidylethanolamine circumvents the classical stalk model. J Phys Chem B 125:13192–13202

Article  CAS  PubMed  Google Scholar 

Kaiser RD, London E (1998) Location of diphenylhexatriene (DPH) and its derivatives within membranes: comparison of different fluorescence quenching analyses of membrane depth. Biochemistry 37:8180–8190

Article  CAS  PubMed  Google Scholar 

Kobayashi T, Startchev K, Whitney AJ, Gruenber J (2001) Localization of lysobisphosphatidic acid-rich membrane domains in late endosomes. Biol Chem 382:483–485

Article  CAS  PubMed  Google Scholar 

Kobayashi T, Beuchat MH, Chevallier J, Makino A, Mayran N, Escola JM, Lebrand C, Cosson P, Kobayashi T, Gruenberg J (2002) Separation and characterization of late endosomal membrane domains. J Biol Chem 277:32157–32164

Article  CAS  PubMed  Google Scholar 

Koppaka V, Lentz BR (1996) Binding of bovine factor Va to phosphatidylcholine membranes. Biophys J 70:2930–2937

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS, Strauss JH (2002) Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell 108:717–725

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lakowicz, JR (2006). Principles of Fluorescence Spectroscopy, In JR Lakowicz, Principles of Fluorescence Spectroscopy, Springer US, Boston, MA, 529–575.

Martinez-Seara H, Róg T, Karttunen M, Vattulainen I, Reigada R (2010) Cholesterol induces specific spatial and orientational order in cholesterol/phospholipid membranes. PLoS ONE 5:e11162

Article  PubMed  PubMed Central  Google Scholar 

Meher G, Chakraborty H (2018) Influence of Eugenol on the Organization and Dynamics of Lipid Membranes: A Phase-Dependent Study. Langmuir 34:2344–2351

Article  CAS  PubMed  Google Scholar 

Meher G, Sinha S, Pattnaik GP, Ghosh Dastidar S, Chakraborty H (2019) Cholesterol Modulates Membrane Properties and the Interaction of gp41 Fusion Peptide To Promote Membrane Fusion. J Phys Chem B 123:7113–7122

Article  CAS  PubMed  Google Scholar 

Meher G, Bhattacharjya S, Chakraborty H (2023) Membrane cholesterol regulates the oligomerization and fusogenicity of SARS-CoV fusion peptide: implications in viral entry. Phys Chem Chem Phys 25:7815–7824

Article  CAS