Andolfo, G., Schuster, C., Gharsa, H. B., Ruocco, M., & Leclerque, A. (2021). Genomic analysis of the nomenclatural type strain of the nematode-associated entomopathogenic bacterium Providencia vermicola. BMC Genomics, 22, 708.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Antoine, R., Gaudin, C., & Hartkoorn, R. C. (2021). Intragenic distribution of IS6110 in clinical Mycobacterium tuberculosis strains: Bioinformatic evidence for gene disruption leading to underdiagnosed antibiotic resistance. Microbiology Spectrum, 9, e00019-21.

Article  CAS  Google Scholar 

Aste, N., Atzori, L., Zucca, M., Pau, M., & Biggio, P. (2001). Gram-negative bacterial toe web infection: A survey of 123 cases from the district of Cagliari, Italy. Journal of the American Academy of Dermatology, 45, 537–541.

Article  CAS  PubMed  Google Scholar 

Bador, J., Amoureux, L., Blanc, E., & Neuwirth, C. (2013). Innate aminoglycoside resistance of Achromobacter xylosoxidans is due to AxyXY-OprZ, an RND-type multidrug efflux pump. Antimicrobial Agents and Chemotherapy, 57, 603–605.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bertelli, C., Laird, M.R., Williams, K. P., Simon Fraser University Research Computing Group, Lau, B. Y., Hoad, G., Winsor, G. L., & Brinkman, F. S. L. (2017). IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Research, 45, W30–W35.

Article  Google Scholar 

Cantillo Garcia, K., Calderón Duran, O., Acosta Pérez, T., Vásquez Jiménez, A., Madrid Pérez, E., Martinez-Ávila, M. C., Rodríguez Yánez, T., & Almanza-Hurtado, A. (2022). A rare case of meningitis caused by Alcaligenes faecalis in an immunocompetent patient. Case Reports in Medicine, 2022, 1559360.

Article  PubMed  PubMed Central  Google Scholar 

Chen, J., Ying, G. G., & Deng, W. J. (2019). Antibiotic residues in food: Extraction, analysis, and human health concerns. Journal of Agricultural and Food Chemistry, 67, 7569–7586.

Article  CAS  PubMed  Google Scholar 

Cohen, E., Davidovich, M., Rokney, A., Valinsky, L., Rahav, G., & Gal-Mor, O. (2020). Emergence of new variants of antibiotic resistance genomic islands among multidrug-resistant Salmonella enterica in poultry. Environmental Microbiology, 22, 413–432.

Article  CAS  PubMed  Google Scholar 

Coleman, S. R., Blimkie, T., Falsafi, R., & Hancock, R. E. W. (2020). Multidrug adaptive resistance of Pseudomonas aeruginosa swarming cells. Antimicrobial Agents and Chemotherapy, 64, e01999-e2019.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Coros, A., DeConno, E., & Derbyshire, K. M. (2008). IS6110, a Mycobacterium tuberculosis complex-specific insertion sequence, is also present in the genome of Mycobacterium smegmatis, suggestive of lateral gene transfer among mycobacterial species. Journal of Bacteriology, 190, 3408–3410.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Deka, J., & Ahmed, G. (2022). Antimicrobial resistance in Escherichia coli isolates collected from poultry meat: An epidemiological surveillance study from Guwahati city. Proceedings of the Zoological Society, 75, 31–38.

Article  CAS  Google Scholar 

Dobrindt, U., Hochhut, B., Hentschel, U., & Hacker, J. (2004). Genomic islands in pathogenic and environmental microorganisms. Nature Reviews Microbiology, 2, 414–424.

Article  CAS  PubMed  Google Scholar 

Fan, X. T., Li, H., Chen, Q. L., Zhang, Y. S., Ye, J., Zhu, Y. G., & Su, J. Q. (2019). Fate of antibiotic resistant Pseudomonas putida and broad host range plasmid in natural soil microcosms. Frontiers in Microbiology, 10, 194.

Article  PubMed  PubMed Central  Google Scholar 

Feng, Y., Chiu, C. H., Heininger, U., Hozbor, D. F., Tan, T. Q., & von Konig, C. W. (2021). Emerging macrolide resistance in Bordetella pertussis in mainland China: Findings and warning from the global pertussis initiative. The Lancet Regional Health - Western Pacific, 8, 100098.

Article  PubMed  PubMed Central  Google Scholar 

Galperin, M. Y., Wolf, Y. I., Makarova, K. S., Vera Alvarez, R., Landsman, D., & Koonin, E. V. (2021). COG database update: Focus on microbial diversity, model organisms, and widespread pathogens. Nucleic Acids Research, 49, D274–D281.

Article  CAS  PubMed  Google Scholar 

Gonzalo-Asensio, J., Pérez, I., Aguiló, N., Uranga, S., Picó, A., Lampreave, C., Cebollada, A., Otal, I., Samper, S., & Martín, C. (2018). New insights into the transposition mechanisms of IS6110 and its dynamic distribution between Mycobacterium tuberculosis complex lineages. PLoS Genetics, 14, e1007282.

Article  PubMed  PubMed Central  Google Scholar 

Grant, W. N., Stasiuk, S., Newton-Howes, J., Ralston, M., Bisset, S. A., Heath, D. D., & Shoemaker, C. B. (2006). Parastrongyloides trichosuri, a nematode parasite of mammals that is uniquely suited to genetic analysis. International Journal for Parasitology, 36, 453–466.

Article  CAS  PubMed  Google Scholar 

Hall, J. P., Wood, A. J., Harrison, E., & Brockhurst, M. A. (2016). Source-sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America, 113, 8260–8265.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Han, J., Xu, Y., Xu, D., Niu, Y., Li, L., Li, F., Li, Z., & Wang, H. (2023a). Mechanism of downward migration of quinolone antibiotics in antibiotics polluted natural soil replenishment water and its effect on soil microorganisms. Environmental Research, 218, 115032.

Article  CAS  PubMed  Google Scholar 

Han, K. I., Jeong, S. E., Nam, Y. H., Jin, H. M., Kim, J. G., & Lee, M. H. (2023b). Complete genome sequence of a sulfur-oxidizing bacterium, Alcaligenes faecalis strain NLF5-7, isolated from livestock wastewater. Microbiology Resource Announcements, 12, e0099922.

Article  PubMed  Google Scholar 

Heir, E., Sundheim, G., & Holck, A. L. (1998). The Staphylococcus qacH gene product: A new member of the SMR family encoding multidrug resistance. FEMS Microbiology Letters, 163, 49–56.

Article  CAS  PubMed  Google Scholar 

Heir, E., Sundheim, G., & Holck, A. L. (1999). The qacG gene on plasmid pST94 confers resistance to quaternary ammonium compounds in staphylococci isolated from the food industry. Journal of Applied Microbiology, 86, 378–388.

Article  CAS  PubMed  Google Scholar 

Huang, C. (2020). Extensively drug-resistant Alcaligenes faecalis infection. BMC Infectious Diseases, 20, 833.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ingti, B., Upadhyay, S., Hazarika, M., Khyriem, A. B., Paul, D., Bhattacharya, P., Joshi, S. R., Bora, D., Dhar, D., & Bhattacharjee, A. (2020). Distribution of carbapenem resistant Acinetobacter baumannii with blaADC-30 and induction of ADC-30 in response to beta-lactam antibiotics. Research in Microbiology, 171, 128–133.

Article  CAS  PubMed  Google Scholar 

Jachna-Sawicka, K., & Gospodarek, E. (2009). Evaluation of occurrence of Alcaligenes faecalis in clinical samples of patients of the university hospital in Bydgoszcz. Medycyna Doswiadczalna i Mikrobiologia, 61, 87–92.

PubMed  Google Scholar 

Jaggi, N., Chatterjee, N., Singh, V., Giri, S. K., Dwivedi, P., Panwar, R., & Sharma, A. P. (2019). Carbapenem resistance in Escherichia coli and Klebsiella pneumoniae among Indian and international patients in North India. Acta Microbiologica Et Immunologica Hungarica, 66, 367–376.

Article  CAS  PubMed  Google Scholar 

Jolley, K. A., Bray, J. E., & Maiden, M. C. J. (2018). Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications. Wellcome Open Research, 3, 124.

Article  PubMed  PubMed Central  Google Scholar 

Kadlec, K., & Schwarz, S. (2018). Antimicrobial Resistance in Bordetella bronchiseptica. Microbiology Spectrum, 6. https://doi.org/10.1128/microbiolspec.ARBA-0024-2017

Kaliaperumal, S., Srinivasan, R., Gupta, A., & Parija, S. C. (2006). Postoperative endophthalmitis due to an unusual pathogen: Alcaligenes faecalis. Eye, 20, 968–969.

Article  CAS  PubMed  Google Scholar 

Kanehisa, M. (2019). Toward understanding the origin and evolution of cellular organisms. Protein Science, 28, 1947–1951.

Article  CAS  PubMed