Andreasen NC (1997) The evolving concept of schizophrenia: from Kraepelin to the present and future. Schizophr Res 28(2–3):105–109

Article  CAS  PubMed  Google Scholar 

Andronache A, von Siebenthal M, Székely G, Cattin P (2008) Non-rigid registration of multi-modal images using both mutual information and cross-correlation. Med Image Anal 12(1):3–15

Article  CAS  PubMed  Google Scholar 

Avants BB, Tustison N, Song G (2009) Advanced normalization tools (ANTS). Insight J 2(365):1–3

Google Scholar 

Battistella G, Najdenovska E, Maeder P, Ghazaleh N, Daducci A, Thiran JP et al (2017) Robust thalamic nuclei segmentation method based on local diffusion magnetic resonance properties. Brain Struct Funct 222:2203–2216

Article  CAS  PubMed  Google Scholar 

Behrens TE, Johansen-Berg H, Woolrich MW, Smith SM, Wheeler-Kingshott CAM, Boulby PA et al (2003) Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nat Neurosci 6(7):750–757

Article  CAS  PubMed  Google Scholar 

Benabid AL, Pollak P, Louveau A, Henry S, De Rougemont J (1987) Combined (thalamotomy and stimulation) stereotactic surgery of the VIM thalamic nucleus for bilateral Parkinson disease. Stereotact Funct Neurosurg 50(1–6):344–346

Article  CAS  Google Scholar 

Bernstein AS, Rapcsak SZ, Hornberger M, Saranathan M, Alzheimer’s disease neuroimaging initiative (2021) Structural changes in thalamic nuclei across prodromal and clinical Alzheimer’s disease. J Alzheimers Dis 82(1):361–371

Article  PubMed  Google Scholar 

Braak H, Braak E (1991) Demonstration of amyloid deposits and neurofibrillary changes in whole brain sections. Brain Pathol 1(3):213–216

Article  CAS  PubMed  Google Scholar 

Cinalli G, Aguirre DT, Mirone G, Ruggiero C, Cascone D, Quaglietta L et al (2018) Surgical treatment of thalamic tumors in children. J Neurosurg Pediatr 21(3):247–257

Article  PubMed  Google Scholar 

Danet L, Barbeau EJ, Eustache P, Planton M, Raposo N, Sibon I et al (2015) Thalamic amnesia after infarct: the role of the mammillothalamic tract and mediodorsal nucleus. Neurology 85(24):2107–2115

Article  PubMed  PubMed Central  Google Scholar 

Deoni SC, Josseau MJ, Rutt BK, Peters TM (2005) Visualization of thalamic nuclei on high resolution, multi-averaged T1 and T2 maps acquired at 1.5 T. Hum Brain Mapp 25(3):353–359

Article  PubMed  PubMed Central  Google Scholar 

Fisher R, Salanova V, Witt T, Worth R, Henry T, Gross R et al (2010) Electrical stimulation of the anterior nucleus of thalamus for treatment of refractory epilepsy. Epilepsia 51(5):899–908

Article  PubMed  Google Scholar 

Gustin SM, Peck CC, Wilcox SL, Nash PG, Murray GM, Henderson LA (2011) Different pain, different brain: thalamic anatomy in neuropathic and non-neuropathic chronic pain syndromes. J Neurosci 31(16):5956–5964

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hale JR, Mayhew SD, Mullinger KJ, Wilson RS, Arvanitis TN, Francis ST, Bagshaw AP (2015) Comparison of functional thalamic segmentation from seed-based analysis and ICA. Neuroimage 114:448–465

Article  PubMed  Google Scholar 

Iglesias JE, Insausti R, Lerma-Usabiaga G, Bocchetta M, Van Leemput K, Greve DN et al (2018) A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. Neuroimage 183:314–326

Article  PubMed  Google Scholar 

Jakab A, Blanc R, Berényi EL, Székely G (2012) Generation of individualized thalamus target maps by using statistical shape models and thalamocortical tractography. Am J Neuroradiol 33(11):2110–2116

Article  CAS  PubMed  PubMed Central  Google Scholar 

Koller WC, Lyons KE, Wilkinson SB, Troster AI, Pahwa R (2001) Long-term safety and efficacy of unilateral deep brain stimulation of the thalamus in essential tremor. Mov Disord 16(3):464–468

Article  CAS  PubMed  Google Scholar 

Kumar VJ, van Oort E, Scheffler K, Beckmann CF, Grodd W (2017) Functional anatomy of the human thalamus at rest. Neuroimage 147:678–691

Article  PubMed  Google Scholar 

Liu Y, D’Haese PF, Newton AT, Dawant BM (2020) Generation of human thalamus atlases from 7 T data and application to intrathalamic nuclei segmentation in clinical 3 T T1-weighted images. Magn Reson Imaging 65:114–128

Article  PubMed  Google Scholar 

Magnotta VA, Gold S, Andreasen NC, Ehrhardt JC, Yuh WT (2000) Visualization of subthalamic nuclei with cortex attenuated inversion recovery MR imaging. Neuroimage 11(4):341–346

Article  CAS  PubMed  Google Scholar 

Mang SC, Busza A, Reiterer S, Grodd W, Klose AU (2012) Thalamus segmentation based on the local diffusion direction: a group study. Magn Reson Med 67(1):118–126

Article  PubMed  Google Scholar 

Morel A, Magnin M, Jeanmonod D (1997) Multiarchitectonic and stereotactic atlas of the human thalamus. J Comp Neurol 387:588–630

Article  CAS  PubMed  Google Scholar 

Nyúl LG, Udupa JK (1999) On standardizing the MR image intensity scale. Magn Reson Med 42(6):1072–1081

Article  PubMed  Google Scholar 

Opfer R, Krüger J, Spies L, Ostwaldt AC, Kitzler HH, Schippling S, Buchert R (2023) Automatic segmentation of the thalamus using a massively trained 3D convolutional neural network: higher sensitivity for the detection of reduced thalamus volume by improved inter-scanner stability. Eur Radiol 33(3):1852–1861

Article  CAS  PubMed  Google Scholar 

Owen SL, Green AL, Stein JF, Aziz TZ (2006) Deep brain stimulation for the alleviation of post-stroke neuropathic pain. Pain 120(1–2):202–206

Article  PubMed  Google Scholar 

Pfefferbaum A, Sullivan EV, Zahr NM, Pohl KM, Saranathan M (2023) Multi-atlas thalamic nuclei segmentation on standard T1-weighed MRI with application to normal aging. Hum Brain Mapp 44(2):612–628

Article  PubMed  Google Scholar 

Roy S, Carass A, Prince J (2011) A compressed sensing approach for MR tissue contrast synthesis. In: Information processing in medical imaging: 22nd international conference, IPMI 2011, Kloster Irsee, Germany, 3–8 July 2011. Proceedings 22. Springer, Berlin, pp 371–383

Sanborn MR, Danish SF, Ranalli NJ, Grady MS, Jaggi JL, Baltuch GH (2009) Thalamic deep brain stimulation for midbrain tremor secondary to cystic degeneration of the brainstem. Stereotact Funct Neurosurg 87(2):128–133

Article  PubMed  Google Scholar 

Schaltenbrand G, Warren W (1977) Atlas for stereotaxy of the human brain, 2nd edn. Thieme, Stuttgart

Google Scholar 

Sherman SM (2007) The thalamus is more than just a relay. Curr Opin Neurobiol 17(4):417–422

Article  CAS  PubMed  PubMed Central  Google Scholar 

Shinohara RT, Sweeney EM, Goldsmith J, Shiee N, Mateen FJ, Calabresi PA et al (2014) Statistical normalization techniques for magnetic resonance imaging. NeuroImage: Clin 6:9–19

Article  PubMed  Google Scholar 

Su JH, Thomas FT, Kasoff WS, Tourdias T, Choi EY, Rutt BK, Saranathan M (2019) Thalamus optimized multi atlas segmentation (THOMAS): fast, fully automated segmentation of thalamic nuclei from structural MRI. Neuroimage 194:272–282

Article  PubMed  Google Scholar 

Su JH et al (2020) Improved Vim targeting for focused ultrasound ablation treatment of essential tremor: a probabilistic and patient-specific approach. Hum Brain Mapp 41(17):4769–4788

Article  PubMed  PubMed Central  Google Scholar 

Su J, Tourdias T, Saranathan M, Ghanouni P, Rutt B (2016) THOMAS: thalamus optimized multi-atlas segmentation at 3T. Proceedings of the 24th annual meeting of the ISMRM, p 4328

Sun X, Shi L, Luo Y, Yang W, Li H, Liang P et al (2015) Histogram-based normalization technique on human brain magnetic resonance images from different acquisitions. Biomed Eng Online 14(1):1–17

Article  Google Scholar 

Tourdias T, Saranathan M, Levesque IR, Su J, Rutt BK (2014) Visualization of intra-thalamic nuclei with optimized white-matter-nulled MPRAGE at 7 T. Neuroimage 84:534–545

Article  PubMed  Google Scholar 

Umapathy L, Keerthivasan MB, Zahr NM, Bilgin A, Saranathan M (2021) Convolutional neural network based frameworks for fast automatic segmentation of thalamic nuclei from native and synthesized contrast structural MRI. Neuroinformatics 20(3):651–664

Article  PubMed  PubMed Central  Google Scholar 

Van Oort ES, Mennes M, Schröder TN, Kumar VJ, Jimenez NIZ, Grodd W et al (2018) Functional parcellation using time courses of instantaneous connectivity. Neuroimage 170:31–40

Article  PubMed  Google Scholar 

Zahr NM, Sullivan EV, Pohl KM, Pfefferbaum A, Saranathan M (2020) Sensitivity of ventrolateral posterior thalamic nucleus to back pain in alcoholism and CD4 nadir in HIV. Hum Brain Mapp 41(5):1351–1361

Article  PubMed  Google Scholar 

Zhang D, Snyder AZ, Fox MD, Sansbury MW, Shimony JS, Raichle ME (2008) Intrinsic functional relations between human cerebral cortex and thalamus. J Neurophysiol 100(4):1740–1748

Article  PubMed  PubMed Central  Google Scholar