Akdag M, Yunt ZS, Kamacioglu A, Qureshi MH, Akarlar BA, Ozlu N (2020) Proximal biotinylation-based combinatory approach for isolating integral plasma membrane proteins. J Proteome Res 19:3583–3592

Article  CAS  PubMed  Google Scholar 

Boschetti, E, Righetti, PG (2013). Low-abundance proteome discovery: state of the art and protocols.

Branon TC, Bosch JA, Sanchez AD, Udeshi ND, Svinkina T, Carr SA, Feldman JL, Perrimon N, Ting AY (2018) Efficient proximity labeling in living cells and organisms with TurboID. Nat Biotechnol 36:880–887

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chiapparino A, Maeda K, Turei D, Saez-Rodriguez J, Gavin AC (2016) The orchestra of lipid-transfer proteins at the crossroads between metabolism and signaling. Prog Lipid Res 61:30–39

Article  CAS  PubMed  Google Scholar 

Cho KF, Branon TC, Rajeev S, Svinkina T, Udeshi ND, Thoudam T, Kwak C, Rhee HW, Lee IK, Carr SA, Ting AY (2020a) Split-TurboID enables contact-dependent proximity labeling in cells. Proc Natl Acad Sci U S A 117:12143–12154

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cho KF, Branon TC, Udeshi ND, Myers SA, Carr SA, Ting AY (2020b) Proximity labeling in mammalian cells with TurboID and split-TurboID. Nat Protoc 15:3971–3999

Article  CAS  PubMed  Google Scholar 

Choksawangkarn W, Kim SK, Cannon JR, Edwards NJ, Lee SB, Fenselau C (2013) Enrichment of plasma membrane proteins using nanoparticle pellicles: comparison between silica and higher density nanoparticles. J Proteome Res 12:1134–1141

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chong ZX, Yeap SK, Ho WY (2021) Transfection types, methods and strategies: a technical review. PeerJ 9:e11165

Article  PubMed  PubMed Central  Google Scholar 

de Jong E, Kocer A (2023) Current methods for identifying plasma membrane proteins as cancer biomarkers. Membranes (basel). https://doi.org/10.3390/membranes13040409

Article  PubMed  PubMed Central  Google Scholar 

Elia G (2008) Biotinylation reagents for the study of cell surface proteins. Proteomics 8:4012–4024

Article  CAS  PubMed  Google Scholar 

Feng S, Yan Z, Guo C, Chen Z, Zhang K, Mo X, Gu Y (2011) Effects of an avidin-biotin binding system on Schwann cells attachment, proliferation, and gene expressions onto electrospun scaffolds. J Biomed Mater Res A 97:321–329

Article  PubMed  Google Scholar 

Fus-Kujawa A, Prus P, Bajdak-Rusinek K, Teper P, Gawron K, Kowalczuk A, Sieron AL (2021) An overview of methods and tools for transfection of eukaryotic cells in vitro. Front Bioeng Biotechnol 9:701031

Article  PubMed  PubMed Central  Google Scholar 

Giansanti P, Tsiatsiani L, Low TY, Heck AJ (2016) Six alternative proteases for mass spectrometry-based proteomics beyond trypsin. Nat Protoc 11:993–1006

Article  CAS  PubMed  Google Scholar 

Gilmore JM, Washburn MP (2010) Advances in shotgun proteomics and the analysis of membrane proteomes. J Proteomics 73:2078–2091

Article  CAS  PubMed  Google Scholar 

Hagner-McWhirter A, Winkvist M, Bourin S, Marouga R (2008) Selective labelling of cell-surface proteins using CyDye DIGE Fluor minimal dyes. J vis Exp. https://doi.org/10.3791/945-v

Article  PubMed  PubMed Central  Google Scholar 

Hung V, Udeshi ND, Lam SS, Loh KH, Cox KJ, Pedram K, Carr SA, Ting AY (2016) Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2. Nat Protoc 11:456–475

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kuhn BT, Zimmermann I, Egloff P, Hurlimann LM, Hutter CAJ, Miscenic C, Dawson RJP, Seeger MA, Geertsma ER (2020) Biotinylation of membrane proteins for binder selections. Methods Mol Biol 2127:151–165

Article  CAS  PubMed  Google Scholar 

Lai X (2013) Reproducible method to enrich membrane proteins with high purity and high yield for an LC-MS/MS approach in quantitative membrane proteomics. Electrophoresis 34:809–817

Article  CAS  PubMed  PubMed Central  Google Scholar 

Leth-Larsen R, Lund RR, Ditzel HJ (2010) Plasma membrane proteomics and its application in clinical cancer biomarker discovery. Mol Cell Proteomics 9:1369–1382

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li Y, Qin H, Ye M (2020) An overview on enrichment methods for cell surface proteome profiling. J Sep Sci 43:292–312

Article  CAS  PubMed  Google Scholar 

Luong JHT, Vashist SK (2020) Chemistry of biotin-streptavidin and the growing concern of an emerging biotin interference in clinical immunoassays. ACS Omega 5:10–18

Article  CAS  PubMed  Google Scholar 

Marks KM, Nolan GP (2006) Chemical labeling strategies for cell biology. Nat Methods 3:591–596

Article  CAS  PubMed  Google Scholar 

Martin J, Sawyer A (2019) Tech news. Biotechniques 66:167–170

Article  CAS  PubMed  Google Scholar 

Rabilloud T (2009) Membrane proteins and proteomics: love is possible, but so difficult. Electrophoresis 30(Suppl 1):S174–S180

PubMed  Google Scholar 

Rucevic M, Hixson D, Josic D (2011) Mammalian plasma membrane proteins as potential biomarkers and drug targets. Electrophoresis 32:1549–1564

Article  CAS  PubMed  Google Scholar 

Scheurer SB, Roesli C, Neri D, Elia G (2005) A comparison of different biotinylation reagents, tryptic digestion procedures, and mass spectrometric techniques for 2-D peptide mapping of membrane proteins. Proteomics 5:3035–3039

Article  CAS  PubMed  Google Scholar 

Torol S, Kasap M (2013) Purification and characterization of OXA-23 from Acinetobacter baumannii. J Enzyme Inhib Med Chem 28:836–842

Article  CAS  PubMed  Google Scholar 

Varady G, Cserepes J, Nemeth A, Szabo E, Sarkadi B (2013) Cell surface membrane proteins as personalized biomarkers: where we stand and where we are headed. Biomark Med 7:803–819

Article  CAS  PubMed  Google Scholar 

Yin H, Flynn AD (2016) Drugging membrane protein interactions. Annu Rev Biomed Eng 18:51–76

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yoneten KK, Kasap M, Akpinar G, Kanli A, Karaoz E (2019) Comparative proteomics analysis of four commonly used methods for identification of novel plasma membrane proteins. J Membr Biol 252:587–608

Article  CAS  PubMed  Google Scholar