Antigen processing and presentation machinery

Gene signatures

Breast cancer

Risk assessment

Gene mutation

Immunotherapy

immune checkpoint blockade

programmed cell death ligand 1

triple negative breast cancer

tumor infiltrating lymphocytes

tumor-associated antigen

tumor-specific antigen

human leukocyte antigen

antigen processing and presentation machinery

professional antigen presenting cells

single-sample gene set enrichment analysis

recurrence-free survival

The Cancer Genome Atlas

gene expression Omnibus

mutation annotation format

weighted gene co-expression network analysis

non-negative matrix factorization

molecular signatures database

random survival forest

the least absolute shrinkage and selection operator

APM-related risk score

tumor immune dysfunction and exclusion

differentially expressed genes

APM-related immunotherapeutic response score

receiver operating characteristic

progression-free survival

cancer-specific survival

antigen-processing-associated transporter protein

ER-associated aminopeptidase

non-small-cell lung cancer

decision curve analysis

All presented data and codes in this study are available from the corresponding author upon reasonable request.

© 2023 The Authors. Published by Elsevier Inc.