Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37(Suppl 2):W202–W208. https://doi.org/10.1093/nar/gkp335
Article CAS PubMed PubMed Central Google Scholar
Brown MH, Paulsen IT, Skurray RA (1999) The multidrug efflux protein NorM is a prototype of a new family of transporters. Mol Microbiol 31(1):394–395. https://doi.org/10.1046/j.1365-2958.1999.01162.x
Article CAS PubMed Google Scholar
Burko Y, Geva Y, Refael-Cohen A, Shleizer-Burko S, Shani E, Berger Y, Halon E, Chuck G, Moshelion M, Ori N (2011) From organelle to organ: ZRIZI MATE-type transporter is an organelle transporter that enhances organ initiation. Plant Cell Physiol 52(3):518–527. https://doi.org/10.1093/pcp/pcr007
Article CAS PubMed Google Scholar
Chen Q, Wang L, Liu D, Ma S, Dai Y, Zhang X, Wang Y, Hu T, Xiao M, Zhou Y (2020) Identification and expression of the multidrug and toxic compound extrusion (MATE) gene family in Capsicum annuum and Solanum tuberosum. Plants 9(11):1448. https://doi.org/10.3390/plants9111448
Article CAS PubMed PubMed Central Google Scholar
Darriba D, Taboada GL, Doallo R, Posada D (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27(8):1164–1165. https://doi.org/10.1093/bioinformatics/btr088
Article CAS PubMed Google Scholar
Das SK, Patra JK, Thatoi H (2016) Antioxidative response to abiotic and biotic stresses in mangrove plants: a review. Int Rev Hydrobiol 101(1–2):3–19. https://doi.org/10.1002/iroh.201401744
Debeaujon I, Peeters AJM, Léon-Kloosterziel KM, Koornneef M (2001) The transparent testa12 gene of Arabidopsis encodes a multidrug secondary transporter-like protein required for flavonoid sequestration in vacuoles of the seed coat endothelium. Plant Cell 13(4):853–871. https://doi.org/10.1105/tpc.13.4.853
Article CAS PubMed PubMed Central Google Scholar
Diener AC, Gaxiola RA, Fink GR (2001) Arabidopsis ALF5, a multidrug efflux transporter gene family member confers resistance to toxins. Plant Cell 13(7):1625–1638. https://doi.org/10.1105/TPC.010035
Article CAS PubMed PubMed Central Google Scholar
Du Z, Su Q, Wu Z, Huang Z, Bao J, Li J, Tu H, Zeng C, Fu J, He H (2021) Genome-wide analysis of the rice MATE gene family: identification genomic organization and expression profiles in response to abiotic stresses. https://doi.org/10.21203/rs.3.rs-62337/v1
Duan W, Lu F, Cui Y, Zhang J, Du X, Hu Y, Yan Y (2022) Genome-wide identification and characterisation of wheat MATE genes reveals their roles in aluminium tolerance. Int J Mol Sci 23(8):4418. https://doi.org/10.3390/ijms23084418
Article CAS PubMed PubMed Central Google Scholar
Durrett TP, Gassmann W, Rogers EE (2007) The FRD3-mediated efflux of citrate into the root vasculature is necessary for efficient iron translocation. Plant Physiol 144(1):197–205. https://doi.org/10.1104/pp.107.097162
Article CAS PubMed PubMed Central Google Scholar
Eddy SR (2011) Accelerated profile HMM searches. PLoS Comput Biol 7(10):e1002195. https://doi.org/10.1371/journal.pcbi.1002195
Frank S, Keck M, Sagasser M, Niehaus K, Weisshaar B, Stracke R (2011) Two differentially expressed MATE factor genes from apple complement the Arabidopsis transparent testa12 mutant. Plant Biol 13(1):42–50. https://doi.org/10.1111/j.1438-8677.2010.00350.x
Article CAS PubMed Google Scholar
Fu L, Niu B, Zhu Z, Wu S, Li W (2012) CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28(23):3150–3152. https://doi.org/10.1093/bioinformatics/bts565
Article CAS PubMed PubMed Central Google Scholar
Fujii M, Yokosho K, Yamaji N, Saisho D, Yamane M, Takahashi H, Sato K, Nakazono M, Ma JF (2012) Acquisition of aluminium tolerance by modification of a single gene in barley. Nat Commun 3:713. https://doi.org/10.1038/ncomms1726
Article CAS PubMed Google Scholar
Furukawa J, Yamaji N, Wang H, Mitani N, Murata Y, Sato K, Katsuhara M, Takeda K, Ma JF (2007) An aluminum-activated citrate transporter in barley. Plant Cell Physiol 48(8):1081–1091. https://doi.org/10.1093/pcp/pcm091
Article CAS PubMed Google Scholar
Gani U, Sharma P, Tiwari H, Nautiyal AK, Kundan M, Wajid MA, Kesari R, Nargotra A, Misra P (2021) Comprehensive genome-wide identification, characterization, and expression profiling of MATE gene family in Nicotiana tabacum. Gene 783:145554. https://doi.org/10.1016/j.gene.2021.145554
Article CAS PubMed Google Scholar
He X, Szewczyk P, Karyakin A, Evin M, Hong W-X, Zhang Q, Chang G (2010) Structure of a cation-bound multidrug and toxic compound extrusion transporter. Nature 467:991–994. https://doi.org/10.1038/nature09408
Article CAS PubMed PubMed Central Google Scholar
Hu B, Jin J, Guo A-Y, Zhang H, Luo J, Gao G (2014) GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics 31(8):1296–1297. https://doi.org/10.1093/bioinformatics/btu817
Article PubMed PubMed Central Google Scholar
Huang M, Guo Z (2005) Responses of antioxidative system to chilling stress in two rice cultivars differing in sensitivity. Biol Plant 49(1):81–84. https://doi.org/10.1007/s00000-005-1084-3
Hvorup RN, Winnen B, Chang AB, Jiang Y, Zhou XF, Saier Jr MH (2003) The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily. Eur J Biochem 270(5):799–813. https://doi.org/10.1046/j.1432-1033.2003.03418.x
Article CAS PubMed Google Scholar
Kathiresan K, Bingham BL (2001) Biology of mangroves and mangrove ecosystems. Adv Mar Biol 40:81–251. https://doi.org/10.1016/S0065-2881(01)40003-4
Katoh K, Rozewicki J, Yamada KD (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings Bioinf 20(4):1160–1166. https://doi.org/10.1093/bib/bbx108
Ku Y-S, Lin X, Fan K, Cheng S-S, Chan T-F, Chung G, Lam H-M (2022) The identification of MATE antisense transcripts in soybean using strand-specific RNA-Seq datasets. Genes 13(2):228. https://doi.org/10.3390/genes13020228
Article CAS PubMed PubMed Central Google Scholar
Kuroda T, Tsuchiya T (2009) Multidrug efflux transporters in the MATE family. Biochim Biophys Acta Proteins Proteomics 1794(5):763–768. https://doi.org/10.1016/j.bbapap.2008.11.012
Kusakizako T, Miyauchi H, Ishitani R, Nureki O (2020) Structural biology of the multidrug and toxic compound extrusion superfamily transporters. Biochim Biophys Acta Biomembranes 1862(12):183154. https://doi.org/10.1016/j.bbamem.2019.183154
Article CAS PubMed Google Scholar
Letunic I, Khedkar S, Bork P (2020) SMART: recent updates, new developments and status in 2020. Nucleic Acids Res 49(D1):D458–D460. https://doi.org/10.1093/nar/gkaa937
Article CAS PubMed Central Google Scholar
Li L, He Z, Pandey GK, Tsuchiya T, Luan S (2002) Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification. J Biol Chem 277(7):5360–5368. https://doi.org/10.1074/jbc.M108777200
Article CAS PubMed Google Scholar
Li Y, He H, He L-F (2019) Genome-wide analysis of the MATE gene family in potato. Mol Biol Rep 46(1):403–414. https://doi.org/10.1007/s11033-018-4487-y
Article CAS PubMed Google Scholar
Liu J, Li Y, Wang W, Gai J, Li Y (2016) Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. BMC Genomics 17(1):223. https://doi.org/10.1186/s12864-016-2559-8
Article CAS PubMed PubMed Central Google Scholar
Lu P, Magwanga RO, Kirungu JN, Hu Y, Dong Q, Cai X, Zhou Z, Wang X, Zhang Z, Hou Y, Wan K, Liu F (2019a) Overexpression of cotton a DTX/MATE gene enhances drought, salt, and cold stress tolerance in transgenic Arabidopsis. Front Plant Sci 10:299. https://doi.org/10.3389/fpls.2019.00299
Lu S, Wang J, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Marchler GH, Song JS, Thanki N, Yamashita RA, Yang M, Zhang D, Zheng C, Lanczycki CJ, Marchler-Bauer A (2019b) CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Res 48(D1):D265–D268. https://doi.org/10.1093/nar/gkz991
Marinova K, Pourcel L, Weder B, Schwarz M, Barron D, Routaboul J-M, Debeaujon I, Klein M (2007) The Arabidopsis MATE transporter TT12 acts as a vacuolar Flavonoid/H+-Antiporter active in proanthocyanidin-accumulating cells of the seed coat. Plant Cell 19(6):2023–2038. https://doi.org/10.1105/tpc.106.046029
Article CAS PubMed PubMed Central Google Scholar
Möller S, Croning MDR, Apweiler R (2001) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17(7):646–653. https://doi.org/10.1093/bioinformatics/17.7.646
Morita Y, Kodama K, Shiota S, Mine T, Kataoka A, Mizushima T, Tsuchiya T (1998) NorM, a putative multidrug efflux protein, of Vibrio parahaemolyticus and its homolog in Escherichia coli. Antimicrob Agents Chemother 42(7):1778–1782. https://doi.org/10.1128/AAC.42.7.1778
Article CAS PubMed PubMed Central Google Scholar
Nakashima K, Yamaguchi-Shinozaki K, Shinozaki K (2014) The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat. Front Plant Sci 5:170. https://doi.org/10.3389/fpls.2014.00170
Article PubMed PubMed Central Google Scholar
Natarajan P, Murugesan AK, Govindan G, Gopalakrishnan A, Kumar R, Duraisamy P
Comments (0)